LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele08g1197	ATGGCACCCAATCCAAGGGTTGCTGCAGCCTATCGTGCAATGACTGTTCTTGGCATTAATGAAGCAAAAGTCAAACCAGTATTGAAGCAACTTCTTAAATTGTATGATAAGAACTGGGAACTTATTGAACAAGAGAACTATAGAGCTCTTGCCGATGCTATATTTGAGCAGGATGAAAAAGAGTTGCAGGGAAAGAGGAAAACAAACCAGAACAATGATGAAGGACAAATGGAGGATGAAGAAGCTCAGATGCAGGATGAACCAGTGCGACCTTTGAAGAGGTTGCGTTTAAGGGGCCAAGAGAATCAGGCTTCACATACTCTGAGTATTTGTGGAACCAGCTCAGCTGCCTCCCCATCTAAAATGCCTAAAGCAGAAGGTGACGAATTGCCTGAAAGTTGTCCCAGCCAGCAGACTCAATACAATGCAATGTCGCCTCGGTCCAATAGAAATGCAGAGACTGAAGTTCGCCCTGTTCCAGTGCGAGATAGTTTTGTTGACAAGGGAAAGCAACCTTTATCACCTCAAGCTGCTCCTGGAGGAAGAAGACTTGGATCTGAAATAGCATCTCCATCAGTGCCATTTAAAGAACCTACAGCTGAACAGAGAATTGTGCCATTACAGAAAAACCTGTTGCCCTATACTCATGCGTTAATCAAGCCTAAAGATGAGCCTATTGATGAACTGGTAGATTATGTTGCTCCTATTGCAACAATTCATCCTGAACTGCCTAGTGGAAGAGACCCTCCAATGCAGCATGATGCAACTAGAAAACAAGACGGGAGTGGTCCTTTAATGTCCAAATGCAGAGACGAAGGTAGAGGGGAAGGTATTCGGGATTCGTCAGATGAAGCAACCCATGGGGTTGCAACAAACCAAGAATTTCCTACCATAGAGATAGCCTCCTCAACATCAGGAGAGGTAAAAATTACTATGAGCTGCAGTTCAGGTCTTGGGAGATCAGATTTTCGTTTGCCCAGTCAAGATCAACTTTTAAAAATGATGGAGGATAAATGTCTGCAATCATATAATATCACTGACCCAAATTTTTCTATCATGAAACTGTTGAGAGATATGTGTGACTGCGTGTTGGAATTCAGAACTGATTCAAATGATGGCTCACAGGAAGGATCTGAAATGATGAGATCGAGTCTAAATGTAGTGAAGGAATCTAGGGCATGTGATTCTCTGATTATCAGAGGCAATACAGAAGATTTAGGAGTGCATGCTGGCATGTCAAATGGATCAATCAACATTCAGTCCTCTTCTGCACTGGCTACTTCTCGCGTTTCCACTTCTCCCCAGCTTTTGAGTGGTATGAATGATGCTTTACTAGTCACCAATAGGGCCAGAAGTGATTTTCCATGTTGTGATGACGGAAAGGGGCTGAAGGATCCTATATCTCCACATTCAGGTAGTTTGGTTGTTGTTCAACAGCATCAGCTTACTCCCGATGATCTAAGGTCTATTCATGGTGCTGAAGACCTTTCAAAAGGAGAAGAAAATCTCAGAATTACATGGGTGAACGAAATAACGAATGATTTCCCTCCACCTTTTCACTATCTGCACCAAAGCATTGGTTTCAGAGATGCTTATGTTAACTGGTGTCTTTCAAACATCAAGTGTGAGGATTACTGTGCAACTTGTTTGGGCGATTGTCTTCTGTCCGGAACATCTTGTGTTTGTGCAAATAAAATTGAGGATGGATGTGCATACACATCCGAAGGGCTACTGAAGGAAAAGTTCTTGGAAGAGTGTATTACCATTACCCGCAATCCTCAACAACATCAGTTCTATTGTAAAATCTGCCCCCTTGAAAGAGCAAAGAACGATGATTCTTTAGAACCGTGTAAAGGACACTTAAAGAGAAAGTTTATCAAAGAATGTTGGGTAAAATGTGGCTGCGTGAAACAGTGTGGCAATAGGGTTGTCCAACGAGGAATCACATTGAAATTGCAGGTGTTTTTTACTTCAGAAGGAAAAGGATGGGGTCTTCGTACCTTGGAGGAGCTTCCAAAAGGTGCATTTGTGTGTGAGTTTGTGGGAGAAATATTAACCATCAAAGAGTTGCATGAGAGAAACATGCAATGTGCTCAAAATGGAACATGCACATACCCAGTTCTATTAGATGCAGATTGGGACTCTGGAGTTATAAATGATAAAGAAGCGCTCTGCTTGGATGCAGCATCTTACGGGAATATTGCTAGGTTTATAAACCACAGATGTTTGGATGCAAACTTGATTGAGATCCCAGTTGAAGTTGAAACCTCGGATCATCGCTACTTTCATCTTGCTTTCTTTACATCCAGAAAAGTAGCTGCACTGGAAGAGCTAACTTGGGATTATGGTATTGACTTTGATGACAATGAGGGTCCTGTTAAGCCATTCTCTTGCAGATGTGGCAGCAAGTTCTGCAGGAAGATGAAGCGATTAAGTAGCAAGTAA	2445	0.4225	MAPNPRVAAAYRAMTVLGINEAKVKPVLKQLLKLYDKNWELIEQENYRALADAIFEQDEKELQGKRKTNQNNDEGQMEDEEAQMQDEPVRPLKRLRLRGQENQASHTLSICGTSSAASPSKMPKAEGDELPESCPSQQTQYNAMSPRSNRNAETEVRPVPVRDSFVDKGKQPLSPQAAPGGRRLGSEIASPSVPFKEPTAEQRIVPLQKNLLPYTHALIKPKDEPIDELVDYVAPIATIHPELPSGRDPPMQHDATRKQDGSGPLMSKCRDEGRGEGIRDSSDEATHGVATNQEFPTIEIASSTSGEVKITMSCSSGLGRSDFRLPSQDQLLKMMEDKCLQSYNITDPNFSIMKLLRDMCDCVLEFRTDSNDGSQEGSEMMRSSLNVVKESRACDSLIIRGNTEDLGVHAGMSNGSINIQSSSALATSRVSTSPQLLSGMNDALLVTNRARSDFPCCDDGKGLKDPISPHSGSLVVVQQHQLTPDDLRSIHGAEDLSKGEENLRITWVNEITNDFPPPFHYLHQSIGFRDAYVNWCLSNIKCEDYCATCLGDCLLSGTSCVCANKIEDGCAYTSEGLLKEKFLEECITITRNPQQHQFYCKICPLERAKNDDSLEPCKGHLKRKFIKECWVKCGCVKQCGNRVVQRGITLKLQVFFTSEGKGWGLRTLEELPKGAFVCEFVGEILTIKELHERNMQCAQNGTCTYPVLLDADWDSGVINDKEALCLDAASYGNIARFINHRCLDANLIEIPVEVETSDHRYFHLAFFTSRKVAALEELTWDYGIDFDDNEGPVKPFSCRCGSKFCRKMKRLSSK	814

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele08g1197	814	Pfam	Ubiquitin-binding WIYLD domain	6	60	IPR018848	GO:0018024
	Lele08g1197	814	MobiDBLite	consensus disorder prediction	101	120	-	-
	Lele08g1197	814	MobiDBLite	consensus disorder prediction	240	300	-	-
	Lele08g1197	814	PANTHER	INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED	1	812	-	-
	Lele08g1197	814	Pfam	SET domain	662	783	IPR001214	GO:0005515
	Lele08g1197	814	Gene3D	-	1	60	IPR043017	-
	Lele08g1197	814	SMART	set_7	650	789	IPR001214	GO:0005515
	Lele08g1197	814	MobiDBLite	consensus disorder prediction	61	88	-	-
	Lele08g1197	814	ProSiteProfiles	Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile.	1	814	IPR025776	-
	Lele08g1197	814	MobiDBLite	consensus disorder prediction	285	300	-	-
	Lele08g1197	814	CDD	SET_SETDB-like	517	783	-	-
	Lele08g1197	814	MobiDBLite	consensus disorder prediction	264	283	-	-
	Lele08g1197	814	SMART	preset_2	493	634	IPR007728	GO:0005634\|GO:0008270\|GO:0018024\|GO:0034968
	Lele08g1197	814	Gene3D	SET domain	496	808	IPR046341	-
	Lele08g1197	814	ProSiteProfiles	SET domain profile.	650	783	IPR001214	GO:0005515
	Lele08g1197	814	MobiDBLite	consensus disorder prediction	100	193	-	-
	Lele08g1197	814	Pfam	Pre-SET motif	497	642	IPR007728	GO:0005634\|GO:0008270\|GO:0018024\|GO:0034968
	Lele08g1197	814	SUPERFAMILY	SET domain	502	807	IPR046341	-
	Lele08g1197	814	MobiDBLite	consensus disorder prediction	132	152	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele08g1197	Lele-ChrLele08	7556326	7560283	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele08g1197	626	808	C2H2 Transcription Factor Family	AT2G23740	41.270	2.71e-31	130

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	SET	Lele08g1197		Pre-SET	1.4e-13	No_clan

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele08g1197	08	7556326	7560283	Lele08g1197	08	7556326	7560283	ECH
	Lele06g1200	06	7561380	7565907	Lele08g1197	08	7556326	7560283	hybridization