Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1188 ATGAATGGTTCTGAAGTCATAGTCTGGCACGGTGAGCTGTCAACATTGAATTGTAGGCCAGGTGTAGGGCCCACGTCATTTATAGGTTTTTGTGAGGGACAAGCGGGGCCCAAGAGTTTCATTACTTCCCTGTCTATTTTCGCGAGCCGGGTGGTGTCTGGTCCCACCCTTTCTCGGCTTGTCGTTTGGAGCGGTGGTTCTACAGGTGGGTCGATGTTAACGGTGTCAAAGGAAGATAATTTGGTCATGTCTTCGGAGGATTCTTCATGCCCAGATGAGTCTGAGCTTGAATTGGGTCTGGGCTTAAGCATTCTTTCTCGTCGTCCTGGGCTCAAGTCCCAACCACCTTCCACGAATCAATATGCTAGAATATTAACCGCTAAAGATTTTCCTTCTATGGTTTCTTCTCATACTGCAACTTCATTAGCTTCATCAACCTCCTCATCTTCTTCTTCCTCTTCCACTCCTTCCTCTGTCACCAGGCCTAACGCCACTGTTGGCACCAAGAGAACTGCCGATTCTGTTGTTGCTACTAATGGGCCCAGTCAGGTCGTAGGATGGCCTCCCATTGGAGCATATCGAATGAACAGCTTTAACAATCATGCAAAGTCACCTGCCACTAATGTGTTCAACTCAGTGACTGAGAAAAGTAAGAGCAATAATACAGAGGCAAGGAAGAGTACTGATTCCGGCATAGATAATAGCAATGTTAGTGCCAAAGGTAAAGGGCACCTGAAGAGTTCCTGGTTTGTGAAGGTAAATATGGATAGGTTACCGATTGGAAGGAAGGTTGATTTGAGCTCTCATAATTCCTATGAGAGCTTAGCGCTTGCTTTGGAAGAGATGTTCGATGAACATGCTGCAGCTGTTTCTAGTAAAAGATCAAATGGGGAAGAACACGGCGTTATGGTCGGAGCAGAAAGACGGTCAAAATTGCTGGATGGATCTTCCAAGTTTGTACTTACTTATGAAGACAAGGATGGAGACTGGATGCTTGTTGGAGATGTACCTTGGGGGATGTTTCTAAGCTCTGTGAGGAGGCTAAGAATCATGAGAACATCTGAGGGTACTGGACTGGCACCAAAGGGTGAAGAAAAGAACAGCAGGCATAGATCTTGTGGGTGGCTCCAATAG 1134 0.463 MNGSEVIVWHGELSTLNCRPGVGPTSFIGFCEGQAGPKSFITSLSIFASRVVSGPTLSRLVVWSGGSTGGSMLTVSKEDNLVMSSEDSSCPDESELELGLGLSILSRRPGLKSQPPSTNQYARILTAKDFPSMVSSHTATSLASSTSSSSSSSSTPSSVTRPNATVGTKRTADSVVATNGPSQVVGWPPIGAYRMNSFNNHAKSPATNVFNSVTEKSKSNNTEARKSTDSGIDNSNVSAKGKGHLKSSWFVKVNMDRLPIGRKVDLSSHNSYESLALALEEMFDEHAAAVSSKRSNGEEHGVMVGAERRSKLLDGSSKFVLTYEDKDGDWMLVGDVPWGMFLSSVRRLRIMRTSEGTGLAPKGEEKNSRHRSCGWLQ 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1188 377 Pfam AUX/IAA family 95 362 IPR033389 -
Lele08g1188 377 ProSiteProfiles PB1 domain profile. 248 355 IPR000270 GO:0005515
Lele08g1188 377 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 94 355 IPR003311 GO:0005634|GO:0006355
Lele08g1188 377 Gene3D - 244 364 - -
Lele08g1188 377 SUPERFAMILY CAD & PB1 domains 245 351 - -
Lele08g1188 377 MobiDBLite consensus disorder prediction 204 239 - -
Lele08g1188 377 MobiDBLite consensus disorder prediction 141 180 - -
Lele08g1188 377 MobiDBLite consensus disorder prediction 357 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1188 Lele-ChrLele08 7514363 7517875 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g1188 252 362 B3 DNA Binding Superfamily AT1G59750 32.432 1.51e-11 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lele08g1188 AUX_IAA 1.4e-59 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g2358 13 29319269 29324212 Lele08g1188 08 7514363 7517875 CCT
Lele14g2290 14 27655012 27659773 Lele08g1188 08 7514363 7517875 CCT
Lele15g0060 15 358037 363837 Lele08g1188 08 7514363 7517875 CCT
Lele16g0064 16 399884 401718 Lele08g1188 08 7514363 7517875 CCT
Lele08g1188 08 7514363 7517875 Lele08g1188 08 7514363 7517875 ECH
Lele06g1194 06 7523029 7526549 Lele08g1188 08 7514363 7517875 hybridization