Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1185 ATGTGGATTTCACCCACGTCAGCGAGGCAGATATTCGTGTGTGTTGGTCGGATTCGAATAAGCAAGGAAAACGCGACTGGCGATCCAAATCCAATTCGTCGTAGTTATATCGACATAAACACACACGACGTTAGAATCGGTACGAGTTTCAAATTGGCATTGCTCTGTTGTTTCTACGTGCTCTTCGTTCAAGTTCTGGTGTTAGGATTTGATGCAGCTGCTTTGATCAAAGAATCAACTCATGGGAACACTGTGAACTGGTGGCTTCTTTCTTTGCCATCCGTTCAGGGTTTAGCTTGGTTTGTTATCAGCTTCTCCGCTTCGCATTGCAAACTCAACTTGTCTGAGAAGTTTCCATTTTTGTTGAGGATTTGGTGGTTGGTCTCATTTGTAATTTGCTTGTGCACTTTGTACCTTGATGGGAGAGAACTTGTGGTGGAAGGTTCAAAACATCTTTCTTCTCATGTTGTGGCGAATTTTACTGCCACTCCAGCTCTTGCTTTTCTGTGCATTGTTGCAATTCGAGGTGGTACTGGCATAAGAGTTAGTAGAAACTCTGATCTTCAAGAGCCATTACTTGCTGAAGAAGAAGAAGAAGTAGGTTGTCTCAAGGTTACTCCATATAATGATGCTGGCATTTTTAGCTTGGCCACTCTCTCTTGGCTTAACCCACTTCTCTCAAATGGGGCTAAGAGACCGCTTGAGCTTAAGGACATTCCCCTTCTTGCGCCAAAAGATCGAGCTAAGACCAATTATGAGATTTTGAACTCTAACTGGGAGAGATTGAAGGCTGAAAATCCTTCAAAGCAGCCTTCATTAGCTTGGGCAATTCTCAAGTCTTACTGGAAGGAGGCAGCTGGTAATGCCATCTTTGCCGGTATGAATACTCTTGTCTCGTATGTAGGATCAGTTGACTGCAGCTTCCTTTCCTGCATCCTTGGAGAGATTCCTAAGCTTTCTGGTGAAGTAAGAGTGTGTGGTTCAGAAGCATATGTCTCCCAATCAGCATGGATACAGTCAGGAAATATTGAAGAAAATATCCTTTTTGGAAGCCCCATGGATAAAGCAAAGTACAAGAGAGTTCTTCATGCTTGTTCACTGAAGAGGGACTTGGAACTTTTCTCTCATGGAAACCAAACAATTATAGGTGATAGAGGTATAAACTTGAGTGGAGGCCAGAAACAGCGAGTGCAGCTTGCACGAGCTCTTTATCAAGATGCTGATATTTACCTCCTCGATGATCCCTTCAGTGCAGTTGATGCTCACACCGGATCAGAACTGTTTAACGAATACATATTGACAGCACTAGCAGATAAAACAGTTATTTTTGTGACCCATCAAGTGGAATTTCTCCCTGCAGCTGATTTGATACTGGTTCTTAAAGAAGGCCGCATCATACAGGCGGGAAAATATGATGATCTTTTACAAGCAGGAACAGATTTTAAAACTCTAGTTTCGGCTCATCACGAAGCCATTGAGGCTATGGATATTCCTAATCACTCAGAAGATTCAGATGAAAATGTGTCCTTGGAGGCATCTGTTATGGCCAGTAAAACGTCCATTATATCTGCAAATGATATTGAAAGTCTAGCAAAGGAAGTGCAAGAGGGTTCATCAGTTTCAGATCAGAAAGCAATCAAGGAGAAGAAGAAAGCGAAACGGTCAAGGAAGAAACAGCTTGTTCAGGAAGAGGAGAGGGTAAGAGGTAGAGTCAGCATGAGGGTGTACTTGTCATACATGGCTGCAGCATATAAAGGCTTGCTGATTCCACTCATAATCATTGCACAAGCATTATTTCAGTTTCTTCAAATTGCTAGTAATTGGTGGATGGCTTGGGCAAATCCTCAAACTGAGGGAGACCAACCCAAAGTAACTCCTATGGTTCTTCTTCTGGTGTACATGGCTCTTGCTTTTGGAAGCTCTTGGTTTATATTTGTAAGGGCTGTTCTGGTAGCTACATTTGGTCTAGCAGCTGCACAGAAACTTTTTATGAAGATGCTTCGAAGTGTTTTCCATGCACCAATGTCTTTCTTTGACTCCACGCCAGCTGGAAGGATATTGAATCGTGTATCGATTGATCAGAGTGTTGTGGATCTTGACATTCCTTTTAGACTAGGAGGATTTGCTTCGACAACAATACAACTTATTGGCATTGTTGGTGTAATGACCAAGGTTACCTGGCAAGTTTTGCTACTGGTTGTCCCAATGGCTTTGGCTTGTTTGTGGATGCAGAAATACTACATGGCTTCTTCAAGGGAGCTGGTTCGTATAGTAAGCATCCAGAAATCTCCAGTTATACATCTTTTTGGTGAATCAATTGCTGGAGCAGCCACCATCAGGGGTTTTGGACAAGAAAAAAGATTCATGAAGAGAAACCTCTATCTTCTGGACTCTTTTGCACGGCCATTCTTCTGCAGTCTTGCAGCTATTGAGTGGCTCTGCCTGCGTATGGAATTATTGTCAACCTTTGTATTTGCTTTCTGCATGATATTACTAGTGAGCTTTCCACATGGAAGTATTGACCCTAGCATGGCTGGACTTGCTGTGACGTATGGGTTGAATTTAAATGCACGTCTGTCACGGTGGATTCTCAGCTTTTGCAAACTTGAGAATAAAATAATTTCTATCGAAAGGATTTATCAATACAGCCAAATTCCTAGTGAAGCACCAACTGTTATTGAAGACACTCGCCCTCCATCCACATGGCCTGAGAATGGGACTATCAGTATAATTGATTTGAAGGTTCGTTACAAGGAGAATCTTCCATTGGTGCTTCATGGAACATCATGCACTTTTCCTGGTGGGAAGAAGATTGGAATAGTTGGACGAACTGGCAGTGGCAAATCTACTTTGATACAAGCATTGTTTCGATTGGTTGAACCATCAAGTGGGAGTATCCTTATAGACGGCATTAATATTTCAAGCATTGGTCTTCATGACCTTCGAAGCCGTCTCAGTATCATACCTCAAGATCCAACGTTATTTGAAGGGACTATACGAGGCAATCTCGACCCTCTTGAAGAGCACTCCAATAAAGAGATTTGGGAGGCACTAGATAAGTCTCAACTTGGAGAGATCATTCGTCAGAAAGAGGAAAAGCTTGACACACAAGTGCTTGAAAATGGAGATAATTGGAGCGTAGGCCAGCGACAACTTGTGGCCCTGGGGCGGGCTTTATTGAAGCAGTCAAGGATACTTGTACTAGATGAAGCAACAGCATCAGTTGATACAGCCACTGATAATCTTATACAGAAGATTATTCGGACAGAGTTTAGAGACTGCACTGTCTGCACTATTGCACATCGTATTCCTACTGTTATTGACAGTGATCTTGTTCTGGTCCTCAGTGATGGTCGAGTTGCAGAGTCTGACACGCCACTGCGACTATTAGAGGATAAGTCCTCCATGTTTCTGAAGTTGGTGACAGAGTATTCATCAAGGTCAAGTGGCATACCAGATTTTTGA 3465 0.4266 MWISPTSARQIFVCVGRIRISKENATGDPNPIRRSYIDINTHDVRIGTSFKLALLCCFYVLFVQVLVLGFDAAALIKESTHGNTVNWWLLSLPSVQGLAWFVISFSASHCKLNLSEKFPFLLRIWWLVSFVICLCTLYLDGRELVVEGSKHLSSHVVANFTATPALAFLCIVAIRGGTGIRVSRNSDLQEPLLAEEEEEVGCLKVTPYNDAGIFSLATLSWLNPLLSNGAKRPLELKDIPLLAPKDRAKTNYEILNSNWERLKAENPSKQPSLAWAILKSYWKEAAGNAIFAGMNTLVSYVGSVDCSFLSCILGEIPKLSGEVRVCGSEAYVSQSAWIQSGNIEENILFGSPMDKAKYKRVLHACSLKRDLELFSHGNQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSELFNEYILTALADKTVIFVTHQVEFLPAADLILVLKEGRIIQAGKYDDLLQAGTDFKTLVSAHHEAIEAMDIPNHSEDSDENVSLEASVMASKTSIISANDIESLAKEVQEGSSVSDQKAIKEKKKAKRSRKKQLVQEEERVRGRVSMRVYLSYMAAAYKGLLIPLIIIAQALFQFLQIASNWWMAWANPQTEGDQPKVTPMVLLLVYMALAFGSSWFIFVRAVLVATFGLAAAQKLFMKMLRSVFHAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLIGIVGVMTKVTWQVLLLVVPMALACLWMQKYYMASSRELVRIVSIQKSPVIHLFGESIAGAATIRGFGQEKRFMKRNLYLLDSFARPFFCSLAAIEWLCLRMELLSTFVFAFCMILLVSFPHGSIDPSMAGLAVTYGLNLNARLSRWILSFCKLENKIISIERIYQYSQIPSEAPTVIEDTRPPSTWPENGTISIIDLKVRYKENLPLVLHGTSCTFPGGKKIGIVGRTGSGKSTLIQALFRLVEPSSGSILIDGINISSIGLHDLRSRLSIIPQDPTLFEGTIRGNLDPLEEHSNKEIWEALDKSQLGEIIRQKEEKLDTQVLENGDNWSVGQRQLVALGRALLKQSRILVLDEATASVDTATDNLIQKIIRTEFRDCTVCTIAHRIPTVIDSDLVLVLSDGRVAESDTPLRLLEDKSSMFLKLVTEYSSRSSGIPDF 1154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1185 1154 Pfam ABC transporter 330 416 IPR003439 GO:0005524
Lele08g1185 1154 FunFam ABC transporter C family member 5 552 889 - -
Lele08g1185 1154 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 898 1137 IPR027417 -
Lele08g1185 1154 SMART AAA_5 934 1127 IPR003593 -
Lele08g1185 1154 SMART AAA_5 294 472 IPR003593 -
Lele08g1185 1154 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 908 1142 IPR003439 GO:0005524
Lele08g1185 1154 SUPERFAMILY ABC transporter transmembrane region 588 888 IPR036640 GO:0005524|GO:0016020
Lele08g1185 1154 Pfam ABC transporter 925 1073 IPR003439 GO:0005524
Lele08g1185 1154 FunFam ABC transporter C family member 3 891 1143 - -
Lele08g1185 1154 Gene3D ABC transporter type 1, transmembrane domain 550 889 IPR036640 GO:0005524|GO:0016020
Lele08g1185 1154 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 591 861 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lele08g1185 1154 Gene3D - 300 512 IPR027417 -
Lele08g1185 1154 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 262 487 IPR003439 GO:0005524
Lele08g1185 1154 CDD ABCC_MRP_domain1 295 464 - -
Lele08g1185 1154 Coils Coil 245 265 - -
Lele08g1185 1154 Coils Coil 546 566 - -
Lele08g1185 1154 CDD ABCC_MRP_domain2 906 1126 - -
Lele08g1185 1154 Gene3D - 891 1144 IPR027417 -
Lele08g1185 1154 FunFam ABC transporter C family member 5 283 496 - -
Lele08g1185 1154 ProSitePatterns ABC transporters family signature. 389 403 IPR017871 GO:0005524|GO:0016887
Lele08g1185 1154 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 209 303 - -
Lele08g1185 1154 Pfam ABC transporter transmembrane region 591 833 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lele08g1185 1154 CDD ABC_6TM_ABCC_D2 589 883 IPR044726 GO:0140359
Lele08g1185 1154 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 297 486 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1185 Lele-ChrLele08 7487894 7494635 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g1185 330 480 Calmodulin-binding Proteins AT2G36910 33.766 2.27e-16 82.8