Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1184 ATGGAGGACGATGCTGATATATACGATGGTGTTAGAGCTCAATTCCCTCTTAGTTTTGGAAAGCAGTCCAAGTCGCAAACCCCTCTTGAAGCCATCCACAATGCCACTCGTCGTTCCAGTTCCAATCTCAGCTCTAATCCCTCTTCTTCTTCGAATCCATCTGCCACGACCACCACCGACACCAAAAGTACCAATGGCCTCCCTTCTATCTCCTCCTCTTCCAAGGCCTGGCTTCATTCCCTCCGCGGCTCCAAAAACCCTAACCCTGATTCTACCGCCGATCGTGGTGGTAGTGCTTCCACTATTGGGCCGTCTCGGCCACCTCTGCCGGTGGAATCTGATGAGGACGGCGGTGTTATGGTGGGACCGCCTCGGCCGCCTGAGGGAGAAGAGGATGATGATACGATGATTGGGCCTCCTCCACCATCTCTTGGTTTAGGTTCCGGTGAAGAAGGGGATGACGATGGGGAGATGATTGGCCCGCCAAGGCCTCCTCCTGGCTCGAATTTGGGTGCCTCGAGTTCTGAGGATGATTCAGACGAAGAGGAGGTGGGGAATCGATTTCGAATTCCTCTGAGCAACGAAATTGTTCTCAAGGGCCACACTAAGGTTGTGTCGGCTCTTGCTGTGGATCACTCTGGGTCTAGAGTACTTTCTGGAAGTTATGACTATACAGTGCGTATGTATGACTTTCAAGGAATGAGTTCGCGGTTGGAATCATTTCGACAATTGGAGCCATTTGAAGGTCATCAAGTTCGCAACCTAAGCTGGAGTCCAAGTGCAGATCGCTTTCTGTGTGTGACAGGGTCAGCTCAAGCAAAGATCTATGATCGAGATGGGCTTACTTTGGGAGAGTTTGTGAAGGGGGACATGTATATCCGTGATCTAAAAAATACTAAAGGGCACATATCTGGATTGACATGGGGAGAATGGCACCCAAAAACCAAGGAAACAATTTTAACATCATCAGAGGATGGATCACTGCGCATATGGGATGTAAATGACTTCAAAAGTCAGAAGCAGGTTATCAAACCAAAGCTTGCAAGACCTGGAAGAGTTCCTGTCACCACATGTGCATGGGATTGTGACGGTAAATGCATAGCTGGTGGTATTGGAGATGGTTCTATACAGATTTGGAGTATTAAGCCTGGATGGGGAAGTAGGCCAGATACATGTATTGACAAAGGGCATTCTGATGATATTACTGGTCTGAAATTTTCTAGTGATGGGAGAGTTTTACTGTCAAGAAGTTTTGATGGTTCATTGAAGGTCTGGGATTTGCGCAAAATAAAGGAACCTCTAAAGGTATTTGAAGGTCTGCCGAATAACTACGGGCAAACAAATATCGCTTTTAGCCCTGATGAACGACTTTTTCTTACTGGAACATCTGTTGAAAGGGAGAGCTCAAGTGGAGGTTTATTGTGCTTTTATGATCGCACAAACCTTGAGCTTGTTTCAAGAGTTGGTATATCGCCCACTTGTAGTGTTGTGCAATGTGCTTGGCATCCTAAACTGAATCAGATCTTTGCAACGGTTGGTGACAAAAGCCAAGGAGGTACTCACGTACTGTATGACCCAACCCTCAGTGAGAGAGGAGCTCTCGTTTGCGTTGCACGTGCACCAAGGAAAAAATCCATTGATGATTTTGAGGCAAAACCGGTTGTTCACAATCCTCATGCCTTACCACTATTTAGAGATCAGCCAAGCCGTAAACGTCAGCGAGAGAAAATACTGAAGGATCCAGTGAAGTCCCATAAGCCTGAACTTCCCATAACAGGGCCTGGTTTTGGTGGGCGAGTTGGTGCAAGTCAAGGAAGTTTGCTGACTCAATATCTTATGAAGCAAGGGGGTATGATTAAGGAGACGTGGATGGAGGAGGATCCGAGAGAAGCTATCCTGAAATATGCTGAGGCTGCAGCAAATGATCCAAAATTCATTGCTCCAGCATATGCAAAAACCCAGCCTGCGCCGGTTTTTCAAACTTCAGATTCTGACGAGGAAGATAAACAGTAG 2013 0.4699 MEDDADIYDGVRAQFPLSFGKQSKSQTPLEAIHNATRRSSSNLSSNPSSSSNPSATTTTDTKSTNGLPSISSSSKAWLHSLRGSKNPNPDSTADRGGSASTIGPSRPPLPVESDEDGGVMVGPPRPPEGEEDDDTMIGPPPPSLGLGSGEEGDDDGEMIGPPRPPPGSNLGASSSEDDSDEEEVGNRFRIPLSNEIVLKGHTKVVSALAVDHSGSRVLSGSYDYTVRMYDFQGMSSRLESFRQLEPFEGHQVRNLSWSPSADRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHISGLTWGEWHPKTKETILTSSEDGSLRIWDVNDFKSQKQVIKPKLARPGRVPVTTCAWDCDGKCIAGGIGDGSIQIWSIKPGWGSRPDTCIDKGHSDDITGLKFSSDGRVLLSRSFDGSLKVWDLRKIKEPLKVFEGLPNNYGQTNIAFSPDERLFLTGTSVERESSSGGLLCFYDRTNLELVSRVGISPTCSVVQCAWHPKLNQIFATVGDKSQGGTHVLYDPTLSERGALVCVARAPRKKSIDDFEAKPVVHNPHALPLFRDQPSRKRQREKILKDPVKSHKPELPITGPGFGGRVGASQGSLLTQYLMKQGGMIKETWMEEDPREAILKYAEAAANDPKFIAPAYAKTQPAPVFQTSDSDEEDKQ 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1184 670 ProSiteProfiles Trp-Asp (WD) repeats profile. 394 428 IPR001680 GO:0005515
Lele08g1184 670 ProSiteProfiles Trp-Asp (WD) repeats profile. 198 239 IPR001680 GO:0005515
Lele08g1184 670 MobiDBLite consensus disorder prediction 650 670 - -
Lele08g1184 670 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 394 428 - -
Lele08g1184 670 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 198 232 - -
Lele08g1184 670 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 299 334 - -
Lele08g1184 670 MobiDBLite consensus disorder prediction 18 99 - -
Lele08g1184 670 Gene3D - 166 287 IPR015943 GO:0005515
Lele08g1184 670 MobiDBLite consensus disorder prediction 1 184 - -
Lele08g1184 670 Pfam WD domain, G-beta repeat 395 426 IPR001680 GO:0005515
Lele08g1184 670 Pfam WD domain, G-beta repeat 354 380 IPR001680 GO:0005515
Lele08g1184 670 Pfam WD domain, G-beta repeat 297 332 IPR001680 GO:0005515
Lele08g1184 670 Pfam WD domain, G-beta repeat 196 230 IPR001680 GO:0005515
Lele08g1184 670 PANTHER GASTRULATION DEFECTIVE PROTEIN 1-RELATED 9 669 - -
Lele08g1184 670 FunFam Nucleotide binding protein 138 286 - -
Lele08g1184 670 ProSiteProfiles Trp-Asp (WD) repeats profile. 299 341 IPR001680 GO:0005515
Lele08g1184 670 ProSitePatterns Trp-Asp (WD) repeats signature. 319 333 IPR019775 -
Lele08g1184 670 FunFam WD repeat-containing protein 70 287 529 - -
Lele08g1184 670 SUPERFAMILY WD40 repeat-like 183 514 IPR036322 GO:0005515
Lele08g1184 670 SMART WD40_4 191 230 IPR001680 GO:0005515
Lele08g1184 670 SMART WD40_4 240 277 IPR001680 GO:0005515
Lele08g1184 670 SMART WD40_4 336 380 IPR001680 GO:0005515
Lele08g1184 670 SMART WD40_4 386 426 IPR001680 GO:0005515
Lele08g1184 670 SMART WD40_4 289 332 IPR001680 GO:0005515
Lele08g1184 670 PRINTS G protein beta WD-40 repeat signature 319 333 IPR020472 -
Lele08g1184 670 PRINTS G protein beta WD-40 repeat signature 367 381 IPR020472 -
Lele08g1184 670 PRINTS G protein beta WD-40 repeat signature 413 427 IPR020472 -
Lele08g1184 670 CDD WD40 197 516 - -
Lele08g1184 670 Gene3D - 288 529 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1184 Lele-ChrLele08 7476756 7479982 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g1184 326 493 Miscellaneous Gene Families AT5G08390 27.326 7.18e-08 53.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele08g1184 08 7476756 7479982 Lele08g1184 08 7476756 7479982 ECH
Lele05g1330 05 8338164 8341297 Lele08g1184 08 7476756 7479982 hybridization
Lele06g1190 06 7481603 7484808 Lele08g1184 08 7476756 7479982 hybridization