Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1175 ATGGTTAGTTACTTCTTTCTTCCTTTATTCATTTCCTGGTGGTGCTTTGATTCTATTCTGCGGGGAGTAAACTACTACTTTAGAGTATAGACAACTTGCTCGTCAAGTTTACAAAGGAATGCAGCAGGAGGCATCAAGTCTGATGATTCAGAGAGCCATTGCCGTAAATACTTGACACAACTTCATTATAAGAATTTAAAGAAATCAGCAATTACCACACAATGTGCATGGAGAGGAAGAGTTGGTCGGCGAGAATTGCGAAAACTCAAGATGGAGGTCAGCTTCTTCATAGAAGCAATTCGTGTCAAGTTCACTAAGGACCTGACAGAGTTGCAGGTTGACATGGAAGTAGCCAAAACACAAGAAAATGAAAGACTGCAGTGTTCTTTGCGTGAGATGCAACTTCAGTTTAAAGAAACTAAAGCAATGCTTGAAAAGGAGCGTGAAGCTGCAAAAAGGGAAGCCGAAATTGTGCCTGTTATACAAGTTCCAGTTATTGACCATGCATTGTTGGAGAAGCTTACTACTGAAAATCAGAAACTCAAGGAGAATGTTGATGCTTTAATAAACTGTGTTACTAAAAACATTGGGTTCAGTAACGGAAAGCCTGTAGCTGCTATTACCATTTACAAATGTCTTCTCCACCGGAAATCATTTGAAGCTGAAAGGACTAGTGTATTTGATCGCCTTATCCAGATGATTGGTTCTGCAATTGAGTATCAAGATGACAATGACCTTATGGCCTATTGGTTGTCAAATACTTCTGCATTATTGTCTTTGCTGCAACAAAGTTTGAAATCTGGTGGTACAACTGACACAACAATTAAAAAACTATACAATCCAACGTCCCTTTTTGGAAGAATGACTTTGGCACCAAGAAAATCAAAAGTAGTTGCACGATCCTTTGGTAAAGATTCTCCAACAGACCACTGGCATAGTATTATTGAATCCCTCAACACATTCTGGATAGCAGAACTGGAGCTATGGTGCTGCCAAGCAAAGGAAGAGGTTGCTAATGCTTTTTTTGTTTTCCCCCTTAATGTTATTCATCAGAAGTACAGAATTTCCTATGATGAAATTACCAATGATTTATGCCCTAATCTAGAGAAGAATTTGAAAGGATATGGTCCTGAACAGGTCATTTCAAGCATGAGAATGATTACGGCCGAGGACTCTAATAATGCTCTCAGTGATTCATTCTTGTTGGAGGACAATTCTAGCATCATCATCCCCTTCTCAGTGGATGGCCTACAAGAGAAGGAATTCTCAGGTGTGAAACCTGCAGAAGAACTTCTCAAGAATCCCGCCTTCCAGTTTTTAGATGAGTAG 1329 0.3958 MVSYFFLPLFISWWCFDSILRGVNYYFRVXTTCSSSLQRNAAGGIKSDDSESHCRKYLTQLHYKNLKKSAITTQCAWRGRVGRRELRKLKMEVSFFIEAIRVKFTKDLTELQVDMEVAKTQENERLQCSLREMQLQFKETKAMLEKEREAAKREAEIVPVIQVPVIDHALLEKLTTENQKLKENVDALINCVTKNIGFSNGKPVAAITIYKCLLHRKSFEAERTSVFDRLIQMIGSAIEYQDDNDLMAYWLSNTSALLSLLQQSLKSGGTTDTTIKKLYNPTSLFGRMTLAPRKSKVVARSFGKDSPTDHWHSIIESLNTFWIAELELWCCQAKEEVANAFFVFPLNVIHQKYRISYDEITNDLCPNLEKNLKGYGPEQVISSMRMITAEDSNNALSDSFLLEDNSSIIIPFSVDGLQEKEFSGVKPAEELLKNPAFQFLDE 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1175 442 FunFam unconventional myosin-Va 51 93 - -
Lele08g1175 442 Coils Coil 171 191 - -
Lele08g1175 442 Coils Coil 123 154 - -
Lele08g1175 442 PANTHER MYOSIN 56 367 - -
Lele08g1175 442 Gene3D - 51 94 - -
Lele08g1175 442 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 52 93 IPR027417 -
Lele08g1175 442 ProSiteProfiles IQ motif profile. 66 94 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1175 Lele-ChrLele08 7395184 7402512 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g1175 291 440 Myosins gene family AT5G43900 38.696 1.31e-29 120
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g1882 13 26642505 26644258 Lele08g1175 08 7395184 7402512 CCT
Lele14g1818 14 24989906 24991096 Lele08g1175 08 7395184 7402512 CCT
Lele15g0528 15 3088651 3089759 Lele08g1175 08 7395184 7402512 CCT
Lele08g1175 08 7395184 7402512 Lele08g1175 08 7395184 7402512 ECH