Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1164 ATGAATCACTGTGTTCCAGATTTTGAAATTGAAATGGATGATGATGAGTATCCGATACCCACGTCTTCTGGGGTGCACCGCCAAAAGAGGCCCTCCGTGCCCGAGGACGATATCATGGAGCTTTTGTGGCAGAACGGCCAGGTCGTGATGCAGAGCCAGAATCAACGGCCTCAGAGGAAACCGCCGCCAGAGAGGTACCCCGACAGCGTAATTCCAGCTGGTCCATCGACGGCAAGGGAGATTCGACCCTCGCAACAATTAGAACAACACTATCAGAATCAACATATCTTCATGCAAGAAGATGAAATGATTTCCTGGCTTCACTATCCCATGGATGTCTACGTTGAATCTGCTGAAGCCAAGAAACAAAATTGTGGATCATCATCTACTAAAAGATCACGTGCTGCAGAGGTTCATAATCTCTCAGAGAGGAGGCGTCGAGATAGGATTAATGAAAAGATGAGAGCCTTGCAAGAACTTATCCCTCGCTGCAATAAGTCCGACAAAGCTTCAATGCTGGATGAAGCAATTGAATACTTGAAGTCACTGCAGTTACAAGTGCAGATGATGTCCATGGGATGTGGGATGATGCATCTACAGTTCATGCAGAATCAGACAATGAACATCCCAACTGTCAGCAAACCAAGTACCAGTAAGAGCCATGAAAATGCAGAAAATAATCAACCAGGTCAACCAGGTTAG 702 0.4615 MNHCVPDFEIEMDDDEYPIPTSSGVHRQKRPSVPEDDIMELLWQNGQVVMQSQNQRPQRKPPPERYPDSVIPAGPSTAREIRPSQQLEQHYQNQHIFMQEDEMISWLHYPMDVYVESAEAKKQNCGSSSTKRSRAAEVHNLSERRRRDRINEKMRALQELIPRCNKSDKASMLDEAIEYLKSLQLQVQMMSMGCGMMHLQFMQNQTMNIPTVSKPSTSKSHENAENNQPGQPG 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1164 233 MobiDBLite consensus disorder prediction 50 76 - -
Lele08g1164 233 CDD bHLH_AtPIF_like 134 197 - -
Lele08g1164 233 Pfam Helix-loop-helix DNA-binding domain 138 184 IPR011598 GO:0046983
Lele08g1164 233 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 137 206 IPR036638 GO:0046983
Lele08g1164 233 MobiDBLite consensus disorder prediction 209 233 - -
Lele08g1164 233 FunFam Basic helix-loop-helix transcription factor 129 192 - -
Lele08g1164 233 Gene3D - 129 192 IPR036638 GO:0046983
Lele08g1164 233 PANTHER TRANSCRIPTION FACTOR PIF3 25 113 IPR044273 GO:0003700|GO:0006355
Lele08g1164 233 SMART finulus 140 189 IPR011598 GO:0046983
Lele08g1164 233 MobiDBLite consensus disorder prediction 1 32 - -
Lele08g1164 233 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 134 183 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1164 Lele-ChrLele08 7287219 7291180 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g1164 112 195 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 76.136 5.17e-34 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele08g1164 HLH 4.4e-14 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele08g1164 08 7287219 7291180 Lele08g1164 08 7287219 7291180 ECH
Lele05g1312 05 8154272 8159368 Lele08g1164 08 7287219 7291180 hybridization
Lele06g1172 06 7290891 7294484 Lele08g1164 08 7287219 7291180 hybridization