Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1153 ATGGAATCCCCAAAAAATGAAACAGCGTTCAAACTTAGCATTCTCTTTTTACCATATTGGTGGATCCTCTCACAATTCCGAAGGGCAACGAAAACAGAAGCCGAAGGAAGGGAGAGAGGATCGTTCCACTTTATTCTGATCAGATCTTCCTATTTATCTCGTATCCTTTCGGCGTTCAAGCATCGAATTCAGATCCATCGGATTGGATATTCATGGCGGCTGCGAGGCGGGGGAGAGAGGATCGTTCCACTTTATTCTGATCAGATCTTCCTATTTATCTCGTATCCTTTCGGCGTTCAAGCATCGAATTCAGATCCATCGGATTGGATATTCATGGCGGCAGCGAGGCGGCTCCGGGACCTGCAAGCCCAATCGGGGAACAGGATCTGCGTTGATTGCTCTCAAAAGAACCCCCAATGGGCTTCCGTTTCCTATGGAGTTTTCATGTGCTTGGAATGTTCCGGCAAGCACCGTGGCCTTGGTGTCCACATCTCCTTCGTCCGATCCGTTACGATGGATTCCTGGTCCGAAATTCAGATCAAGAAGATGGAAGCAGGTGGTAATGAGAAACTCAACGCCTTCCTCGCCCAGTATGGTATCGCCAAGGAGACCGATATTGTCGCCAAATACAATACTAATGCCGCTAGCATTTATAGGGATCGAATTCAGGCCCTTGCCGAGGGACGACCGTGGCGGGATCCACCGGTAGTCAGGGAGAACCTTGGGCCTGGGAAGAGTAAGCCTCCGTTGCCGAAAAGCGGAAATGATGGAGGCTGGGACAATTGGGGTAACGATGACGGGGTCAGATCTCCCCATGACATCAAGCGCAACATGTCTACAGGGGATGTAAGGGGGTTCACCGGAGGTTCGACCGGTAGCATGCCCGCGAGATCGAGGTCGACAGAGGATATCTACACGCGGTCGCAATTGGAGGCTTCCGCTGCCAACAAAGACAACTTTTTCGCTCGCAAGCTGGCAGAGAACGACTCACGACCCGAAGGGATTCCACCCTCGCAAGGAGGCAAGTACGTCGGATTCGGATCTAGTCCCGCACCTTCCCGGGTGAATAACCAACAAGGCGATGTCTTTTCAGTTATGTCTCAGGGATTTGGTAAATTGTCTTTGGCTGCTGCCTCTGCGGCCCAGTCTGCTGCTAATGTTGTTCAGGCTGGCACTAAAGAGGTCGCTACCAAGGTAAAGGATGGTGGCTATGATCACAGAGTCAATGAAACTGTCAATGTTGTCTCTCAGAAGACATCAGAGATAGGACAAAGGACGTGGGGGATTATGAAGGGGGTCATGGCTTTGGCTTCGCAGAAGGTTGAGGAGTACACCAGAGATAACCCCAGCTGGCCGAATGATAACTGGCAGGGAAATGGAAATGATAGAAACGGCTATTATCAAGAATATAATCAAGGGAATAAAGAAAGAACCAACTAA 1440 0.5021 MESPKNETAFKLSILFLPYWWILSQFRRATKTEAEGRERGSFHFILIRSSYLSRILSAFKHRIQIHRIGYSWRLRGGGERIVPLYSDQIFLFISYPFGVQASNSDPSDWIFMAAARRLRDLQAQSGNRICVDCSQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNEKLNAFLAQYGIAKETDIVAKYNTNAASIYRDRIQALAEGRPWRDPPVVRENLGPGKSKPPLPKSGNDGGWDNWGNDDGVRSPHDIKRNMSTGDVRGFTGGSTGSMPARSRSTEDIYTRSQLEASAANKDNFFARKLAENDSRPEGIPPSQGGKYVGFGSSPAPSRVNNQQGDVFSVMSQGFGKLSLAAASAAQSAANVVQAGTKEVATKVKDGGYDHRVNETVNVVSQKTSEIGQRTWGIMKGVMALASQKVEEYTRDNPSWPNDNWQGNGNDRNGYYQEYNQGNKERTN 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1153 479 MobiDBLite consensus disorder prediction 229 303 - -
Lele08g1153 479 Gene3D Arf GTPase activating protein 111 234 IPR038508 -
Lele08g1153 479 SMART arf_gap_3 115 231 IPR001164 GO:0005096
Lele08g1153 479 FunFam ADP-ribosylation factor GTPase-activating protein 110 240 - -
Lele08g1153 479 MobiDBLite consensus disorder prediction 444 479 - -
Lele08g1153 479 CDD ArfGap_ArfGap1 114 228 - -
Lele08g1153 479 PRINTS HIV Rev interacting protein signature 167 188 IPR001164 GO:0005096
Lele08g1153 479 PRINTS HIV Rev interacting protein signature 127 146 IPR001164 GO:0005096
Lele08g1153 479 PRINTS HIV Rev interacting protein signature 146 163 IPR001164 GO:0005096
Lele08g1153 479 MobiDBLite consensus disorder prediction 283 303 - -
Lele08g1153 479 Pfam Putative GTPase activating protein for Arf 116 205 IPR001164 GO:0005096
Lele08g1153 479 ProSiteProfiles ARF GTPase-activating proteins domain profile. 115 231 IPR001164 GO:0005096
Lele08g1153 479 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 112 476 IPR044519 GO:0005096|GO:0016192
Lele08g1153 479 SUPERFAMILY ArfGap/RecO-like zinc finger 116 219 IPR037278 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1153 Lele-ChrLele08 7212649 7216152 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g1153 116 198 C2H2 Transcription Factor Family AT4G21160 51.190 3.99e-23 98.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele08g1153 08 7212649 7216152 Lele13g1856 13 26464271 26467587 CCT
Lele08g1153 08 7212649 7216152 Lele14g1797 14 24832430 24835769 CCT
Lele08g1153 08 7212649 7216152 Lele15g0555 15 3274311 3275877 CCT
Lele08g1153 08 7212649 7216152 Lele16g0569 16 3206358 3207942 CCT
Lele08g1153 08 7212649 7216152 Lele08g1153 08 7212649 7216152 ECH
Lele05g1297 05 8081847 8084417 Lele08g1153 08 7212649 7216152 hybridization
Lele06g1161 06 7210157 7216213 Lele08g1153 08 7212649 7216152 hybridization