Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1152 ATGGTGGGTATCTTCTCCTTTGTAACGGGGAGGCCTGGTCCCAGTGGCTTTGGATCTGCTTCCACTGCTGAACAGGTTACTGAAGGAATCGATGCCACCAATCTCACTGCCATTGTCACTGGAGGAGCAAGTGGTATAGGGTTGGAAACGGCAAGAGTCTTGGCTCTTCGAAAAGCCCACGTCATCATTGCTGCCAGGAACATGGAGGCTGCAAAGGAAGCTAAACAGCTTATTCTGCAAGAAAATGAGTCCGCTAAAGTGGAGATTCTCAAGCTTGATCTCTGCTCGGTCAAATCTGTCAGATCATTTGTGGACAACTTCATCGCTCTTGATCTTCCTCTCAACATCTTAATAAACAATGCTGGTGTCATGTTCTGCCCCTTCCAACTCTCGGAGGATGGGATCGAGATGCAATTTGCTACTAATCATCTTGGTCATTTCCTATTGACAAACCTTCTTCTTGACAAGATGAAGCAAACTGCAAAATCAAGTGGAATCGAGGGCAGGATCGTCAATTTGTCATCAATTGCCCATACCTACACTTATGAAGAGGGTATTCGCTTTGATCAGATCAATGATCAAATGGGATGCTCTGACAAAAAAGCATATGGGCAGTCCAAGTTGGCCAATATATTGCACGCAAATGAGCTTTCTCGTCGCCTGCAGGAAGAGGGGGTGAACATTACAGCCAATTCAGTCCACCCAGGAGTTATAATGACTCCTCTCATGAGATATTCTTCCTTCCTTATGCATTTTCTCAAGTTGTTCACCTTTTTCATATGGAAGAATGTCCCACAGGGAGCAGCCACTACATGTTACGTTGCTCTGCACCCAAGTGTGAAAGGTGTTAGTGGGAAATACTTTCTGGATTGCAATGAGTTTGAACCCAGTGCTTTCGCTACAGATCAGCTCTTAGGGAGGAAACTTTGGGATTTTAGCAACAAGCTGATCAAATCTATTTCAAAAGATTGA 972 0.4465 MVGIFSFVTGRPGPSGFGSASTAEQVTEGIDATNLTAIVTGGASGIGLETARVLALRKAHVIIAARNMEAAKEAKQLILQENESAKVEILKLDLCSVKSVRSFVDNFIALDLPLNILINNAGVMFCPFQLSEDGIEMQFATNHLGHFLLTNLLLDKMKQTAKSSGIEGRIVNLSSIAHTYTYEEGIRFDQINDQMGCSDKKAYGQSKLANILHANELSRRLQEEGVNITANSVHPGVIMTPLMRYSSFLMHFLKLFTFFIWKNVPQGAATTCYVALHPSVKGVSGKYFLDCNEFEPSAFATDQLLGRKLWDFSNKLIKSISKD 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1152 323 CDD retinol-DH_like_SDR_c_like 36 310 - -
Lele08g1152 323 Coils Coil 68 88 - -
Lele08g1152 323 Gene3D - 25 320 - -
Lele08g1152 323 PANTHER RETINOL DEHYDROGENASE 14 318 - -
Lele08g1152 323 Pfam short chain dehydrogenase 36 183 IPR002347 -
Lele08g1152 323 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 35 295 IPR036291 -
Lele08g1152 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 112 123 IPR002347 -
Lele08g1152 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 203 222 IPR002347 -
Lele08g1152 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 168 176 IPR002347 -
Lele08g1152 323 PRINTS Glucose/ribitol dehydrogenase family signature 226 243 IPR002347 -
Lele08g1152 323 PRINTS Glucose/ribitol dehydrogenase family signature 162 178 IPR002347 -
Lele08g1152 323 PRINTS Glucose/ribitol dehydrogenase family signature 36 53 IPR002347 -
Lele08g1152 323 PRINTS Glucose/ribitol dehydrogenase family signature 112 123 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1152 Lele-ChrLele08 7205331 7207892 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g1152 35 242 Miscellaneous Gene Families AT2G29340 27.962 2.58e-08 51.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele08g1152 08 7205331 7207892 Lele08g1152 08 7205331 7207892 ECH
Lele05g1296 05 8072172 8074974 Lele08g1152 08 7205331 7207892 hybridization
Lele06g1160 06 7207265 7209812 Lele08g1152 08 7205331 7207892 hybridization