Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1147 ATGGCTTTTTTCTCCGGACTCCGCCGCCTTATTCGGGATTCATCTTCTTCCTCGTCGATTATCTATTCGCAACTTACTTCGATTCGTCTTAGTTCCACTCTCACATCCCCCAGGCTTTTCGTCAGTGGTCTTTCAAGACTGACGACAGATGAAAAACTGAAGCAAGCATTTGCTTCTTTTGGGCAGCTGGTCGAAGCTAAGGTCATAACAGATAGAATCTCTGGAAGATCAAAGGGATTTGGTTTTGTAACTTACGCAACCATAGAAGATGCTGAAAAGGCCAAAGAAGAAATGAATGCTAAGTTTTTGGATGGATGGGTTATTTTTGTTGATCCTGCCAAACCAAGAGAACCTAAACCTCTGCAATCACAGCCTAAGCCCTCCGAAACAGGTTTTACAGTTAACAAGACGGTTGGATGGTGTGGTTGA 429 0.4359 MAFFSGLRRLIRDSSSSSSIIYSQLTSIRLSSTLTSPRLFVSGLSRLTTDEKLKQAFASFGQLVEAKVITDRISGRSKGFGFVTYATIEDAEKAKEEMNAKFLDGWVIFVDPAKPREPKPLQSQPKPSETGFTVNKTVGWCG 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1147 142 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 37 115 IPR000504 GO:0003723
Lele08g1147 142 MobiDBLite consensus disorder prediction 117 142 - -
Lele08g1147 142 FunFam RNA binding protein 24 136 - -
Lele08g1147 142 SMART rrm1_1 38 111 IPR000504 GO:0003723
Lele08g1147 142 PANTHER NUCLEOLAR PROTEIN 8 16 141 - -
Lele08g1147 142 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 39 105 IPR000504 GO:0003723
Lele08g1147 142 SUPERFAMILY RNA-binding domain, RBD 36 126 IPR035979 GO:0003676
Lele08g1147 142 Gene3D - 13 126 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1147 Lele-ChrLele08 7183272 7188144 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g1147 39 126 Eukaryotic Initiation Factors Gene Family AT3G16380 36.170 2.79e-12 61.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele08g1147 08 7183272 7188144 Lele13g1852 13 26448174 26450750 CCT
Lele08g1147 08 7183272 7188144 Lele14g1794 14 24815348 24817727 CCT
Lele08g1147 08 7183272 7188144 Lele15g0558 15 3289431 3292013 CCT
Lele08g1147 08 7183272 7188144 Lele16g0571 16 3220374 3222755 CCT
Lele08g1147 08 7183272 7188144 Lele08g1147 08 7183272 7188144 ECH
Lele05g1293 05 8057915 8060372 Lele08g1147 08 7183272 7188144 hybridization
Lele06g1155 06 7186658 7188617 Lele08g1147 08 7183272 7188144 hybridization