Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1134 ATGATGTTAACGGCGAAAGGGCATTTGATGGAGCTTGCATGTTTTCAACGAAAACCGCATTCAATATATTATTCCGAGGGTGAAATAGGAATCTCATGGTGGAATGCTTGGAATAGATTTGGAGGCATGAAGAGGGAGAGAGAATCCGAGAGCCTGGACCTGGCCAATTGTCTGATGCTGCTGTCTCACCATGCTCAACAACACAGCAAGGTTGATACTTCAGAATTCGAGTGCAAGACGTGCAAGCGAAAGTTCTCGTCGTTTCAGGCGCTGGGAGGGCACAGGGCGAGCCACAAGCGGCCGAAGCTCGACGGAGAAGACGACCTGAAAGCAGAGGCCAAATCTCTCAAGTTAGGGAACAAGCCCAGGATGCACGAGTGCTCCATCTGTGGGCTTGAATTCTCGTTGGGGCAAGCACTTGGGGGCCACATGAGGAAGCACAGAGCCGCTCTTCGCCATGACCCCAACCCGGCGGACGACCATGTGGTTGCCAAGGTCCCTGTTCTTAAGAGATCCAATAGTACGAGGGTGTTTTGTTTGGACCTCAACTTAACGCCTCTCCAGAATGATATGAACTTGTTGTTTGGGAAGATGCCACCGGCTCTCACTTGA 612 0.5131 MMLTAKGHLMELACFQRKPHSIYYSEGEIGISWWNAWNRFGGMKRERESESLDLANCLMLLSHHAQQHSKVDTSEFECKTCKRKFSSFQALGGHRASHKRPKLDGEDDLKAEAKSLKLGNKPRMHECSICGLEFSLGQALGGHMRKHRAALRHDPNPADDHVVAKVPVLKRSNSTRVFCLDLNLTPLQNDMNLLFGKMPPALT 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1134 203 ProSitePatterns Zinc finger C2H2 type domain signature. 78 98 IPR013087 -
Lele08g1134 203 Pfam C2H2-type zinc finger 76 101 - -
Lele08g1134 203 Pfam C2H2-type zinc finger 125 149 - -
Lele08g1134 203 PANTHER ZINC FINGER PROTEIN ZAT5 44 189 - -
Lele08g1134 203 SMART c2h2final6 125 147 IPR013087 -
Lele08g1134 203 SMART c2h2final6 76 98 IPR013087 -
Lele08g1134 203 Gene3D Classic Zinc Finger 73 147 - -
Lele08g1134 203 SUPERFAMILY beta-beta-alpha zinc fingers 76 147 IPR036236 -
Lele08g1134 203 ProSitePatterns Zinc finger C2H2 type domain signature. 127 147 IPR013087 -
Lele08g1134 203 ProSiteProfiles Zinc finger C2H2 type domain profile. 76 103 IPR013087 -
Lele08g1134 203 ProSiteProfiles Zinc finger C2H2 type domain profile. 125 147 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1134 Lele-ChrLele08 7115037 7116310 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g1134 43 197 C2H2 Transcription Factor Family AT2G37430 48.824 1.77e-44 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele08g1134 zf-C2H2_6 1.3e-09 CL0361