Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1130 ATGGAGTCTCTGTCTAAACTGAACCACTGTGCTCAACCATGGAACATATCTACTAGTTACCACCGTTCGTCCTTTCCGACCCACTTTTCCTCGGTCTCCTTCAGGGCGCTACCGCCGCCGGCTTCGCCCCTCCAGTTTCCTTCTTCATCCATCCGCTTATCTCCTCTCAGAGCCTCTTCCTCATCCTCATCCTCATCCACCGATCCCTCATTTCATAAGCCCGGACCAATTTTGACCCGTATGTTCCAAACCCTAAATCCCCTTCTGTTACCTGTTGTCGAAACTGCCTGCATCCTTGTAGCCGCGTCTGCATTTTTCTTCATGCGTTTCCAGCACATGCCTGCTATTGCGGCTCCGGTGGCGTCACCCACGGTGGAGTCCGCCCGAGAGTCGACGGATAGACTTTCGCTTGAAGAAAAGGAGAGAACTATTGAAGAGCAATTGATGGACAACCCTAATAACGTCGAAGCTCTTCGGTCTCTCATGGAGCTTAAAATCAGAGCGCATAAAACTGAGGAGGCTGTTCAGGTCATTGACCGTTTGATTGAACTTGAACCCCAGGACTCTGAGTGGCCGCTTATGAAAGCTCATATGTATATCTATAATGGTGACTACCAATTGGGCAAAGGTTTGTTCGAAGACATTCTTAATAAAGATCCATATCGTTTTGAAGCTTATCATGGCCTTGCAATGGCTACTTCGGAGTCGAATGAGCCATTGAACGATTTGGTGAAGAGGGTTGAAAAAGCAGTGGAGTTTTGCAGAAAGGAAAAGAGGAATTCAGATGTCAGAGACTTGAAGCTATTACTTGCGCAGATTAAAGTCATGGAGGGATCCTTTACTGATGCGCTGAAGGCCTATCAGGCACTTGTCAAGGAAGAACCAAGAGATTTCAGGCCGTACTTATGTCAGGGCATCATATATACCCTGTTAGGAAAGAAAGATGAAGCGGAGAAACAATTTGACAAGTTCCGGAGGCTCGTCCCAAAGAATCACCCTTATAAGGAGTATTTTCAGGATAATATGTTCGCAACCAAGTTTTTCGCGCACAAGTTTGAGAGGGAGGGAGCTGGAACGAAGAGATGA 1086 0.4705 MESLSKLNHCAQPWNISTSYHRSSFPTHFSSVSFRALPPPASPLQFPSSSIRLSPLRASSSSSSSSTDPSFHKPGPILTRMFQTLNPLLLPVVETACILVAASAFFFMRFQHMPAIAAPVASPTVESARESTDRLSLEEKERTIEEQLMDNPNNVEALRSLMELKIRAHKTEEAVQVIDRLIELEPQDSEWPLMKAHMYIYNGDYQLGKGLFEDILNKDPYRFEAYHGLAMATSESNEPLNDLVKRVEKAVEFCRKEKRNSDVRDLKLLLAQIKVMEGSFTDALKAYQALVKEEPRDFRPYLCQGIIYTLLGKKDEAEKQFDKFRRLVPKNHPYKEYFQDNMFATKFFAHKFEREGAGTKR 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1130 361 ProSiteProfiles TPR repeat profile. 298 331 IPR019734 GO:0005515
Lele08g1130 361 Gene3D Tetratricopeptide repeat domain 121 345 IPR011990 GO:0005515
Lele08g1130 361 SUPERFAMILY TPR-like 152 332 IPR011990 GO:0005515
Lele08g1130 361 Pfam Tetratricopeptide repeat 269 330 - -
Lele08g1130 361 ProSiteProfiles TPR repeat profile. 155 188 IPR019734 GO:0005515
Lele08g1130 361 PANTHER CELLULOSE SYNTHASE OPERON PROTEIN C 130 235 - -
Lele08g1130 361 SMART tpr_5 264 297 IPR019734 GO:0005515
Lele08g1130 361 SMART tpr_5 155 188 IPR019734 GO:0005515
Lele08g1130 361 SMART tpr_5 298 331 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1130 Lele-ChrLele08 7082320 7083405 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele08g1130 08 7082320 7083405 Lele13g1842 13 26384161 26388921 CCT
Lele08g1130 08 7082320 7083405 Lele14g1786 14 24773783 24779019 CCT
Lele08g1130 08 7082320 7083405 Lele15g0566 15 3347148 3351891 CCT
Lele08g1130 08 7082320 7083405 Lele16g0580 16 3266044 3270183 CCT
Lele05g1277 05 7953651 7959275 Lele08g1130 08 7082320 7083405 hybridization
Lele06g1139 06 7071433 7074688 Lele08g1130 08 7082320 7083405 hybridization