Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1124 ATGGATCTCAAAAAAGCAGCCGTCCTCAACAGTACTCCCTCTGAACCCCCCACACCCACCACCCCTCGTCCCACTCTCTTGCTCTCCTCTTCCGGCAAGGCCCTCCTCGTTTCCAACTCTGGTAAATCCCTCCACCTTTCCAATTCCAATAAATCCATTCTCTCCAATTCCGGCAAGCGTTTCGACAAGAAGAAGTACGTCAAGCAGGAGCTTCTGCCCCATGCCACCAGCGAGGCCCTTTCCTTGAAAAATCAATCCGGCTTCGATATCTTACATATTGCTGCTAGCCATGGCCACCTAGGCATTGTTCAGGTGTTACTGGACCATGATCCGGGGCTAATAAATACATTTGGACAATCAAATGCAACTCCTCTCATATCAGCAGCTACAAAAGGGCATGCAGATGTTGTTGATCTTTTGTTATCACGAGATCCTAGACAGGTGGAGTTATCTAGGTCCAATGGAAAGAATGCACTCCATTTTGCTGCCCGTCAGGGACATGCTTGTATTGTAAAATCATTACTCGAAAAGGATCCACAACTTACTCGAAGGACTGATAAGAAAGGGCAGACTCCGCTGCATATGGCTGTAAAGGGAGTTAGCTGTGAAGTCGTGAAGTTGCTTCTTAATGCGGATCCAGCAACTGTTGCACTGCCTGACAAGTTTAACAATACTGCATTACATATTGCCACCAGGAAGAAGAGGGCAGAGGTATCGCTTTGTTGGCTGAACTTCAAACAGTTTTACCAGAAAATCATGCAGCAATTCATAAATATTACAATTCTACTCCTTGCTTTCATGTACATTACCTATATGTCATGCCTGTCTATTTATGACCGACATAAAATCATGCAGATAGTGAATGAGCTATTGCTTCATTCTGAAATCAATGTCAATGCCCTAACAAGAGACCGTAAAACATCTCTTGACATTGCCGATGGACTCCCTCCATCCGAGGAAATCCTAGATATAAGAGATTGCCTGGTTCGTAGCGGTGGAGTTAAAGCCAGTGATCTAATTAACCAACCGAGGGATGAGCTAAGGAGGACTGTGACACAGATTAGGAAGGAGGTCCATATTCAGCTTGAACAAACTCGAAAGACAAACAAAAACGTGGATGGGATTGCAAAGGAGCTACGCAAGCTGCACAGAGCGGGGATCAACAACGCTACCAACTCAGTTACAGTGGTTGCTTCACTCTTTGCAACAGTTGCATTTTCTGCAGTTTTTGCAGTTCCTGGTGGGGATTCTGATAGTGGGGAGGCGGTTATGGTGACCACTCCACCTTTCAAGATCTTCCTTATTTCTAATGCAATTTCACTCTTTACATCACTGGTTGTTGTCGTGGTTCAGATCACAGTTGTTAGAGGGGAGACAAAGTCTGAAAGGAGGGTTGTGAGGGTGATTAATAAGCTAATGTGGTTAGCCTCTATTTCTACCACGATTGCATTCATTTCATCATCTTATATAGTAGTTGGTCGACGTAACATTTGGGCTGCAATCTTTATTACTGTGATAGGGGGAGTTATGATGGCGGGTGTTCTTGGTGCTATGACATATTATGTGGTTAAATACAAACGTATTCGGAAGGGGGATAGGGTAGTGTCTTTTGTTATGCTTGTTTTATTGTTTTGGGAGGTCGTTGTACCCTTTGTGGATATAACCTATTATGTTCTTCAAATCATTCGGCATACTGACTTCCGGCGTCAGTATCAGCTTCGATAG 1725 0.4423 MDLKKAAVLNSTPSEPPTPTTPRPTLLLSSSGKALLVSNSGKSLHLSNSNKSILSNSGKRFDKKKYVKQELLPHATSEALSLKNQSGFDILHIAASHGHLGIVQVLLDHDPGLINTFGQSNATPLISAATKGHADVVDLLLSRDPRQVELSRSNGKNALHFAARQGHACIVKSLLEKDPQLTRRTDKKGQTPLHMAVKGVSCEVVKLLLNADPATVALPDKFNNTALHIATRKKRAEVSLCWLNFKQFYQKIMQQFINITILLLAFMYITYMSCLSIYDRHKIMQIVNELLLHSEINVNALTRDRKTSLDIADGLPPSEEILDIRDCLVRSGGVKASDLINQPRDELRRTVTQIRKEVHIQLEQTRKTNKNVDGIAKELRKLHRAGINNATNSVTVVASLFATVAFSAVFAVPGGDSDSGEAVMVTTPPFKIFLISNAISLFTSLVVVVVQITVVRGETKSERRVVRVINKLMWLASISTTIAFISSSYIVVGRRNIWAAIFITVIGGVMMAGVLGAMTYYVVKYKRIRKGDRVVSFVMLVLLFWEVVVPFVDITYYVLQIIRHTDFRRQYQLR 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1124 574 Pfam Domain of unknown function 387 491 IPR026961 -
Lele08g1124 574 Pfam Ankyrin repeats (3 copies) 81 143 IPR002110 GO:0005515
Lele08g1124 574 Pfam Ankyrin repeats (3 copies) 151 213 IPR002110 GO:0005515
Lele08g1124 574 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 67 526 - -
Lele08g1124 574 SMART ANK_2a 154 183 IPR002110 GO:0005515
Lele08g1124 574 SMART ANK_2a 188 218 IPR002110 GO:0005515
Lele08g1124 574 SMART ANK_2a 222 261 IPR002110 GO:0005515
Lele08g1124 574 SMART ANK_2a 86 116 IPR002110 GO:0005515
Lele08g1124 574 SMART ANK_2a 120 150 IPR002110 GO:0005515
Lele08g1124 574 Gene3D - 39 146 IPR036770 -
Lele08g1124 574 ProSiteProfiles Ankyrin repeat profile. 154 186 IPR002110 GO:0005515
Lele08g1124 574 MobiDBLite consensus disorder prediction 1 25 - -
Lele08g1124 574 ProSiteProfiles Ankyrin repeat region circular profile. 154 177 - -
Lele08g1124 574 ProSiteProfiles Ankyrin repeat profile. 86 109 IPR002110 GO:0005515
Lele08g1124 574 ProSiteProfiles Ankyrin repeat region circular profile. 86 109 - -
Lele08g1124 574 ProSiteProfiles Ankyrin repeat region circular profile. 188 210 - -
Lele08g1124 574 Gene3D - 147 320 IPR036770 -
Lele08g1124 574 SUPERFAMILY Ankyrin repeat 80 312 IPR036770 -
Lele08g1124 574 ProSiteProfiles Ankyrin repeat profile. 188 210 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1124 Lele-ChrLele08 7052152 7058064 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g1124 17 529 Miscellaneous Gene Families AT3G09550 56.143 0.0 561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele08g1124 08 7052152 7058064 Lele13g1834 13 26351165 26355208 CCT
Lele08g1124 08 7052152 7058064 Lele14g1779 14 24745002 24746664 CCT
Lele08g1124 08 7052152 7058064 Lele15g0570 15 3375531 3385372 CCT
Lele08g1124 08 7052152 7058064 Lele16g0588 16 3306002 3307135 CCT
Lele07g1319 07 7961694 7964416 Lele08g1124 08 7052152 7058064 ECH
Lele08g1124 08 7052152 7058064 Lele08g1124 08 7052152 7058064 ECH
Lele05g1271 05 7919670 7925390 Lele08g1124 08 7052152 7058064 hybridization
Lele06g1135 06 7048135 7050431 Lele08g1124 08 7052152 7058064 hybridization