Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1109 ATGGCGGACTTCAGTTCCAGTCTCCTCCACAATTTTGAACCCATGAGTGGGCCAAATCTGGGTATCTGCTACTTTTCCCTTCAACTAAGAACACAAGCTATGGGCAGTAGAACTGCATCTGTTCTTGAATGCTTGTATGTTCCTATACCGGATTCCTATGGATTTGCGTTAAGACCTCAACATGCACAAAGTTACAGACAGTATGCTTCTGTCTACAAGGAGGAGGAAGGTGAAAGGGCAGATAAATGGAGAGACTTCCTTGAACAGATAGTTAAATCGTCTCAATCATGTTCTTCTGAGAATAAGCTCGAAGAAATATCTAAAGCTAGGGGTTGTGAGATTAAAGAAAGGACAAGTTCAGGTAGCGTAAGTGAAGGAAATGATTTCAGTATCACGAAGTCATGTGAAGGGACTGAGTTAGAAGAAGAGACAAGTGCAGAGAGGGTAAGTGAAGGAAATGATTTGAGTTTGGAGAAATCTTGTGAGGGGATTAAGGTAGAAGAGGAGACAGGTGGAGAGTGGGTAAGTGAAGGAAATGATTTGAGTGGCAGGAAGTCTTTTAAAGGTACTGAGATTAAAGAAGGGACAATTCCATTGAGGGTTAGTGAAGGGAATGATTCAATTGGCAAGAAGTCTGTTTGTGATGGTTCAACAGCAAGTGGTTCTGAAAAGGAGGTGCACTGTCCAGAAGAAAGAAAGTCCCGTAAGGTTCAAACCTGGGGTGAAATTAGGCCTTCTCTTGCTGCCGTTGAGAAACTGACGAGTAATCGTGTCAAGAAGCAAAGAAAATTGAAGTTGAGCAGACAAATGCTGAAGGAATTGGAGTCCCTAGTTCAGGGAGGAGTGCCCAAAGATCTCAGAGGAGAGGTATGGCAAGCATTTGTAGGAGTGAAGACACGTAGGGTGGAAAGCTATTATGAGGATCTGTTGGCTCAAGAAACTGACAGTAGCGAAAGGAAGGAGCAGGATGATTCATCTGGTGCATTAGGGAAGTGGAGAAAGCAGATTGAGAAGGACATACCACGAACTTTCCCAGGACATACTGCTTTGGATGAAAATGGCAGGAATTCCTTAAGGCGTTTACTCCTAGCATATGCTCGGCACAACCCCTCTGTTGGCTACTGTCAGGCAATGAACTTCTTTGCTGGTTTGTTGCTGCTTCTTATGCCAGAGGAAAATGCATTTTGGTTATCATACAGAGGAAATGGTAGAATCCCAGTTAATCATCTGGATTACTTGGGAGTGCAGGTGGCTTGGATAACTGGACCTTGGTTCCTATCAATCTTTGTAAACATTATTCCTTGGGAAAGTGGGAACCGTGTAATGCTATTTCGAACAGCCCTTGCTTTAATGGCGTTATATGGTCCTGCATTAGTTACTACAAAAGATGCAGGTGATGCAATTACTCTATTGCAATCATTTGCTGGCTCAACATTTGATAGCAGTCAGCTCGTAGTTACTGCTTGTGTGAGTTTTCTAGCTGTGACTGAGTCTAGATTGCAGGAACTGAGAGAAAAGCATCGGCCATCTGTACTAGTTGTTGTGGAGGAAATGTCTAAAAAGGGGCGAGTTTGGAACGATTCCAAAGGGCTTGCATCTAAACTGTACAGTTTCAAGCATGACCCAGGACCACTGGTAGAAGAAATGAAAACCAATGAAGGAGGTGATATGGAAAATGTTGGGGACAAATCACCGTTGGAATCCCATTCCTCCAACTTGGATGAACTGCTCAATAGCCTCAATGTTGATTCAGAAGTAGATTCCCTTCCAGATCTGCAGGAACAGTTGAGTGATTATGGGTCTTCTTCTCTGCAAGCATCTAGGCTTTTCTTGGCCTTTTTGTGGTTGAGATTATTCTTCTCTGTGCAGGTGGTTTGGTTGAAGGTCGAGTTATGCAGAATGCTAGAGGAGAAAAGATCTGCTATAATCAGATCTGAGGAGCTAGAAACAGCACTTATGGTTATGGAGATGGTCAAGCAAGATAATCGACGGGAACTGAGTGCCAGGGTCCTAATGCGGGTAGAGCAGGAGCAAAAGGTTACTGAAGATGCTCGCAGAAGATCTGAGCAAGACCTTGCTGCTCAGAAATATGTAGTTCATATGCTTCAGGAAAAGTATGATAAATCCATGGCATCGATCAAAGAGATGGAAAAGCGGGTTCTAATGGCTGAAAGCATGTTAGAGGCCACCCTTCAATATGAATCTGGCCAATCGAAAGCACTTTCTCCAAGGTGCTAG 2238 0.4357 MADFSSSLLHNFEPMSGPNLGICYFSLQLRTQAMGSRTASVLECLYVPIPDSYGFALRPQHAQSYRQYASVYKEEEGERADKWRDFLEQIVKSSQSCSSENKLEEISKARGCEIKERTSSGSVSEGNDFSITKSCEGTELEEETSAERVSEGNDLSLEKSCEGIKVEEETGGEWVSEGNDLSGRKSFKGTEIKEGTIPLRVSEGNDSIGKKSVCDGSTASGSEKEVHCPEERKSRKVQTWGEIRPSLAAVEKLTSNRVKKQRKLKLSRQMLKELESLVQGGVPKDLRGEVWQAFVGVKTRRVESYYEDLLAQETDSSERKEQDDSSGALGKWRKQIEKDIPRTFPGHTALDENGRNSLRRLLLAYARHNPSVGYCQAMNFFAGLLLLLMPEENAFWLSYRGNGRIPVNHLDYLGVQVAWITGPWFLSIFVNIIPWESGNRVMLFRTALALMALYGPALVTTKDAGDAITLLQSFAGSTFDSSQLVVTACVSFLAVTESRLQELREKHRPSVLVVVEEMSKKGRVWNDSKGLASKLYSFKHDPGPLVEEMKTNEGGDMENVGDKSPLESHSSNLDELLNSLNVDSEVDSLPDLQEQLSDYGSSSLQASRLFLAFLWLRLFFSVQVVWLKVELCRMLEEKRSAIIRSEELETALMVMEMVKQDNRRELSARVLMRVEQEQKVTEDARRRSEQDLAAQKYVVHMLQEKYDKSMASIKEMEKRVLMAESMLEATLQYESGQSKALSPRC 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1109 745 Pfam Rab-GTPase-TBC domain 285 397 IPR000195 -
Lele08g1109 745 PANTHER RAB GTPASE-ACTIVATING PROTEIN 1-LIKE 120 397 - -
Lele08g1109 745 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 268 398 IPR035969 -
Lele08g1109 745 ProSiteProfiles TBC/rab GAP domain profile. 281 642 IPR000195 -
Lele08g1109 745 MobiDBLite consensus disorder prediction 135 155 - -
Lele08g1109 745 FunFam Ypt/Rab-GAP domain of gyp1p superfamily protein 310 399 - -
Lele08g1109 745 Gene3D - 406 509 - -
Lele08g1109 745 Coils Coil 699 719 - -
Lele08g1109 745 MobiDBLite consensus disorder prediction 117 134 - -
Lele08g1109 745 SMART tbc_4 278 462 IPR000195 -
Lele08g1109 745 Gene3D - 236 293 - -
Lele08g1109 745 MobiDBLite consensus disorder prediction 117 155 - -
Lele08g1109 745 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 408 489 IPR035969 -
Lele08g1109 745 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 294 399 - -
Lele08g1109 745 MobiDBLite consensus disorder prediction 201 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1109 Lele-ChrLele08 6981271 6989146 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele08g1109 08 6981271 6989146 Lele13g1814 13 26236224 26238679 CCT
Lele08g1109 08 6981271 6989146 Lele14g1757 14 24626143 24628679 CCT
Lele08g1109 08 6981271 6989146 Lele15g0592 15 3492210 3494639 CCT
Lele08g1109 08 6981271 6989146 Lele16g0606 16 3412929 3415467 CCT
Lele07g1304 07 7909996 7911856 Lele08g1109 08 6981271 6989146 ECH
Lele08g1109 08 6981271 6989146 Lele08g1109 08 6981271 6989146 ECH
Lele05g1258 05 7867592 7869194 Lele08g1109 08 6981271 6989146 hybridization
Lele06g1122 06 6989084 6993711 Lele08g1109 08 6981271 6989146 hybridization