Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1101 ATGCCGCCTAAGCAGCAATCGAAAGCTGATGTAGCAAAGAAGCAGAAGATCGTAGAGGATAAAACCTTTGGTCTTAAAAACAAGAATAAGAGCAAAAATGTCCAGAAATACGTTCAGAGCCTCAAGCAGTCTGTGCAGCCGAAGCCTGATCCTTCCAAAACCGCTGCCAAGAAAAAGAAGGAGGAAGACAAGGCAAAGGAGAAGGAGCTAAATGAGTTGTTCAAAATCGCTATTACCCAGCCTAAAGTGCCAGTTGGTGTTGATCCCAAGTCCATAGTATGTGAGTTTTTTAAAGCAGGACAGTGTACCAAGGGCTTTAAATGCAAGTTCTCACATGATTTGAATGTTCAGAGGAAAGGGGAAAAGATTGACATTTACAGTGATAAGCGAGACCAGGAAACGATGGAGGATTGGGATCAAGAGACCTTGGAGAAGGTAGTGGAGTCAAAGAAAACCGAGTATCAACAGAATAAGCCAACTGAGATTGTCTGTAAACATTTTCTGGAGGCAGTGGAGAAGAAGCAATATGGTTGGTTTTGGGTCTGCCCGAATGGTGGTAAGGATTGCCACTATAGACATGCCCTTCCCCCTGGATATGTTTTAAAATCTCAAATGAAGGCCCTGTTGGAGGAAGAAGCTGACAAGATGCCAATTGAGGAGGAGATTGAAGATCAGCGCTCCAAATTGAAAACTACTACTACTATGACTCCTGAGTTATTCATGCAATGGAAGAAGAAGAAGATTGAAGAAAGAGATGCCAATTTGGCGGAACAACAGGCAGAGAGAGCTAAGAATGATCGCATGAGTGGTCGCGAGCTATTTTTGTCTAATGCTAGCTTGTTTGTGGATGATGCTGAGGCATATGACCAGTATCAAAGAGAGCCAGAATCTAACAATAACGAGCAGAAGCCACAGGCAAATGGCAATGTTCATGAAGGTCCTAACGCCTCAACAGCTACTGATGCTGATGCTGAAGGAGAAGCTAATGATGAAGCGATTGATGTAGATGATGATGATGAGCTAGACATGGATGAATTGAATGAATTGGAAGCAAGTTTATCGAAGACATCAATCCAAATAAAGGAGCCAGGAGCTGAAGCTTAA 1104 0.4293 MPPKQQSKADVAKKQKIVEDKTFGLKNKNKSKNVQKYVQSLKQSVQPKPDPSKTAAKKKKEEDKAKEKELNELFKIAITQPKVPVGVDPKSIVCEFFKAGQCTKGFKCKFSHDLNVQRKGEKIDIYSDKRDQETMEDWDQETLEKVVESKKTEYQQNKPTEIVCKHFLEAVEKKQYGWFWVCPNGGKDCHYRHALPPGYVLKSQMKALLEEEADKMPIEEEIEDQRSKLKTTTTMTPELFMQWKKKKIEERDANLAEQQAERAKNDRMSGRELFLSNASLFVDDAEAYDQYQREPESNNNEQKPQANGNVHEGPNASTATDADAEGEANDEAIDVDDDDELDMDELNELEASLSKTSIQIKEPGAEA 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1101 367 SUPERFAMILY CCCH zinc finger 89 113 IPR036855 GO:0046872
Lele08g1101 367 ProSiteProfiles Zinc finger C3H1-type profile. 158 196 IPR000571 GO:0046872
Lele08g1101 367 PANTHER ZINC FINGER-CONTAINING PROTEIN P48ZNF 1 365 - -
Lele08g1101 367 Coils Coil 246 266 - -
Lele08g1101 367 MobiDBLite consensus disorder prediction 39 64 - -
Lele08g1101 367 MobiDBLite consensus disorder prediction 290 367 - -
Lele08g1101 367 MobiDBLite consensus disorder prediction 292 316 - -
Lele08g1101 367 ProSiteProfiles Zinc finger C3H1-type profile. 88 115 IPR000571 GO:0046872
Lele08g1101 367 Pfam DRG Family Regulatory Proteins, Tma46 216 294 IPR032378 -
Lele08g1101 367 Gene3D - 202 279 - -
Lele08g1101 367 Gene3D - 87 200 - -
Lele08g1101 367 SMART c3hfinal6 158 195 IPR000571 GO:0046872
Lele08g1101 367 SMART c3hfinal6 88 114 IPR000571 GO:0046872
Lele08g1101 367 MobiDBLite consensus disorder prediction 324 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1101 Lele-ChrLele08 6940511 6943913 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele08g1101 DFRP_C 1.5e-16 No_clan