Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1098 ATGTTGGATCTTAATGTCAACGTCGTTTCCTCTGATTCCGCTTCGGATTCCGTCGACTTGCCTGCCGAGAATGTTGTGCTACTTTCTGGTAGCCAAATGGATAGCTCTGGAAGCTTTAATTCTTCCATCGTCAATGCCGATGCCTCCACCAATACTTTTGATGAAGACTCTTGCTCTTATGGTGATGCCTTTGCTAACAACTTTGGAACCGTGAAGAATAACACAGATGATGGCACAACCTACAAAGCAGTTGATCTTCCAGTAGGCGAAGGTGAAGATGCCTGTGATCGGACCATCCCGCTTTTTCCGATCGCCGGTGCCAAAGAGGGTCGCGTCACTGAATTGGGAATCGGTCAGCGATTTCCAGGTTCGTCTTCAAGTAAGGGATGGTTGGATTTCCTGTGCAAGGAGGTAGGTCCAGGTGGAACGCCGGAACAGAGGATGCCGCCGCCACCACAGCAGAAACCGCAGGTTAAGAAGAGTCGGCGGGGACCGAGGTCACGGAGCTCACAGTATCGCGGTGTTACATTTTATCGAAGAACTGGAAGATGGGAATCGCATATATGGGATTGTGGAAAACAAGTTTACTTGGGCGGATTTGATGCAGCACATGCTGCGGCAAGGGCATATGATCGAGCTGCAATCAAGTTCCGTGGCCTTGATGCTGATATTAATTTCAATGTTAGTGATTATGAGGATGATATAAAGCAGATGAGTAATTTCACAAAGGAAGAGTTTGTGCATATTCTGCGGCGACAGAGCACTGGCTTTTCAAGGGGAAGCTCTAAATATAGAGGAGTTACTCTGCATAAATGCGGGCGATGGGAAGCTCGCATGGGGCAGTTTCTAGGGAAGAAGTATATATATCTCGGGCTATTTGATAGCGAAATAGAGGCTGCAAGTGTGCTACAATCTTATGAAACCAGGGCGTATGATAAAGCGGCTATAAAATGCAATGGGAGGGAAGCAATGACAAACTTTGAGCCAAGCTCATACGAAGGGGAGATAATCTTTCAGTCACACAATGAAGATCGCAACCCAAATCTTGATCTTAGCTTGGCCATTGCCCCCCCTGCTTACTCTGACGGTTTTCAAGTCCAGCATGGCTGGGCCAATCTTCCTGTTGATGGGAGAGTTGCGTTCGAGAACTCTGCATCAAGGTTATTGAAGGGTCAACCGTCTCATGTTTTCCCGATTGCACCCCAGCATCCTTCTGCCTGGAATAGTGCTGATTTCTTTCCCATAAATCAGGAAAGAGTAATGGAGAAAAGAATGGAAGCTAATTCCCTGCCAAACTGGGTATTTCCATACCAAGGTCCATATGGCGAGGCAACTTTGATTCCATCTTTCTCTGCCGCAGCATCATCAGGATTCCCTTCAACAAGGTTACCACCAGCAGCAGCAGCTGATAGTCAGATTCATTTTCCAAACATGACGATCCATCCTTAG 1449 0.4714 MLDLNVNVVSSDSASDSVDLPAENVVLLSGSQMDSSGSFNSSIVNADASTNTFDEDSCSYGDAFANNFGTVKNNTDDGTTYKAVDLPVGEGEDACDRTIPLFPIAGAKEGRVTELGIGQRFPGSSSSKGWLDFLCKEVGPGGTPEQRMPPPPQQKPQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDAAHAAARAYDRAAIKFRGLDADINFNVSDYEDDIKQMSNFTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEIEAASVLQSYETRAYDKAAIKCNGREAMTNFEPSSYEGEIIFQSHNEDRNPNLDLSLAIAPPAYSDGFQVQHGWANLPVDGRVAFENSASRLLKGQPSHVFPIAPQHPSAWNSADFFPINQERVMEKRMEANSLPNWVFPYQGPYGEATLIPSFSAAASSGFPSTRLPPAAAADSQIHFPNMTIHP 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1098 482 Gene3D AP2/ERF domain 262 329 IPR036955 GO:0003700|GO:0006355
Lele08g1098 482 Gene3D AP2/ERF domain 170 229 IPR036955 GO:0003700|GO:0006355
Lele08g1098 482 PRINTS Ethylene responsive element binding protein signature 310 330 IPR001471 GO:0003700|GO:0006355
Lele08g1098 482 PRINTS Ethylene responsive element binding protein signature 264 275 IPR001471 GO:0003700|GO:0006355
Lele08g1098 482 ProSiteProfiles AP2/ERF domain profile. 171 227 IPR001471 GO:0003700|GO:0006355
Lele08g1098 482 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 145 349 - -
Lele08g1098 482 FunFam AP2-like ethylene-responsive transcription factor 170 229 - -
Lele08g1098 482 SUPERFAMILY DNA-binding domain 262 329 IPR016177 GO:0003677
Lele08g1098 482 SMART rav1_2 263 334 IPR001471 GO:0003700|GO:0006355
Lele08g1098 482 SMART rav1_2 171 233 IPR001471 GO:0003700|GO:0006355
Lele08g1098 482 Pfam AP2 domain 171 219 IPR001471 GO:0003700|GO:0006355
Lele08g1098 482 MobiDBLite consensus disorder prediction 139 172 - -
Lele08g1098 482 SUPERFAMILY DNA-binding domain 170 229 IPR016177 GO:0003677
Lele08g1098 482 ProSiteProfiles AP2/ERF domain profile. 263 328 IPR001471 GO:0003700|GO:0006355
Lele08g1098 482 CDD AP2 262 330 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1098 Lele-ChrLele08 6928085 6930630 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g1098 158 354 AP2-EREBP Transcription Factor Family AT4G36920 78.000 3.87e-91 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Lele08g1098 AP2 5.3e-05 CL0081