Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1094 ATGTTCTACTGTCTATTTCCACAATTAGCCGCTATTTGGTCTGTGAAATGTCGCATGGAAATTAAAAATAAACGAGACAAGAGATTTGATTCAATAAATTGCGGAGTCCTTCCTCAGACTCGGAACGAGGAATGTGAACAGGAACCACGTGGTCGAATAATCTGCCCAGCCTTGATCTTCAGCACAGAGCCCGAAGCGTCCGATCCTTCTCTCATTCTCACCGATCTCACGCTCGCGCCAATTACAAATTCTCCACTTCCCCCCAGGATTCCTACATCGATGGCTGATGCTCCGACCAGTCCCGGCGCTGGTGGTAGCCACGAGAGCGGTGACCAGAGCCCCCGCTCTAATGCCCGAGAGCAGGATAGGTACCTGCCTATCGCCAATATCAGCCGAATCATGAAGAAGGGACTTCCCCCTAATGGAAAAATCGCCAAGGATGCCAAGGAGACCGTGCAGGAATGCGTTTCCGAGTTCATCAGCTTTATCACGAGCGAGGCGAGTGATAAGTGTCAGAGGGAAAAGAGAAAGACGATCAACGGCGACGATTTACTTTGGGCAATGGCAACTTTAGGATTCGAGGATTACCTCGATCCTCTTAAGATTTATCTGAGCAGATACAGGGAGATGGAGGGTGATACCAAAGGTTCGGCCAAGGGCGGAGAATCTGCCAAGAAAGATGTTCAACCAAGTCCTAATGCTCAGCTCGCCTATCAAGGTTCTTTCTCCCAAGGTGTTCATTATACAAATTCTCCGCCTCAGGTTCAACGTATGATGGTTCCTATGCAAGACCCAGAATAG 801 0.4906 MFYCLFPQLAAIWSVKCRMEIKNKRDKRFDSINCGVLPQTRNEECEQEPRGRIICPALIFSTEPEASDPSLILTDLTLAPITNSPLPPRIPTSMADAPTSPGAGGSHESGDQSPRSNAREQDRYLPIANISRIMKKGLPPNGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYLDPLKIYLSRYREMEGDTKGSAKGGESAKKDVQPSPNAQLAYQGSFSQGVHYTNSPPQVQRMMVPMQDPE 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1094 266 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 124 188 IPR003958 -
Lele08g1094 266 MobiDBLite consensus disorder prediction 228 257 - -
Lele08g1094 266 FunFam Nuclear transcription factor Y subunit B-3 113 236 - -
Lele08g1094 266 SUPERFAMILY Histone-fold 121 230 IPR009072 GO:0046982
Lele08g1094 266 MobiDBLite consensus disorder prediction 212 266 - -
Lele08g1094 266 MobiDBLite consensus disorder prediction 84 124 - -
Lele08g1094 266 ProSitePatterns NF-YB/HAP3 subunit signature. 155 171 IPR003956 GO:0005634|GO:0006355|GO:0043565
Lele08g1094 266 PRINTS CCAAT-binding transcription factor subunit A signature 190 208 - -
Lele08g1094 266 PRINTS CCAAT-binding transcription factor subunit A signature 171 189 - -
Lele08g1094 266 PRINTS CCAAT-binding transcription factor subunit A signature 152 170 - -
Lele08g1094 266 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 108 230 IPR027113 GO:0001228|GO:0006355|GO:0016602
Lele08g1094 266 Gene3D Histone, subunit A 111 244 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1094 Lele-ChrLele08 6892821 6897131 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g1094 100 262 CCAAT-HAP3 Transcription Factor Family AT2G37060 77.515 1.11e-83 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lele08g1094 CBFD_NFYB_HMF 6.6e-27 CL0012
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele07g1286 07 7789633 7791301 Lele08g1094 08 6892821 6897131 ECH
Lele08g1094 08 6892821 6897131 Lele08g1094 08 6892821 6897131 ECH
Lele05g1239 05 7760819 7763370 Lele08g1094 08 6892821 6897131 hybridization
Lele06g1105 06 6883098 6885552 Lele08g1094 08 6892821 6897131 hybridization