Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1084 ATGGGGAGGAAGGGAAATTGGTTTTCTAGTGTGAAGAAAGCTTTCAGCCCAGAGTCAGAGAAAAAGGACAAGGAAGATCAGAAATCAAGCAAATCAAAGAAGAAATGGTTTGGGAAGCAAAAATTGGAGATCTCCTCAGACTCATACGTGGGTTCTGAGAAAACAGCACGCTCCTCTGCTCCTCCACCTGAAGAAAGTAAATCATATGATGTTGAGAATGAAGCCAGTCAAAGTCAAGTTCATCAAGTTGCAACTTCTGTGGATTCTGAGAGACCAATCCCTGCTGTTCAGACACCAGTTGTTCCAATTCAAGCCCCTAAAATCTCTCGGTTTGCCGGTAAATCAAGGGAAGAGGTGGCTGCAATAAAGATTCAGACAACTTTTAGGGGATACCTGGAAAGAAGAGCTTTGCGAGCTCTAAGAGGGCTGGTGAGATTGAGGACACTAATGGAAGGGCCAATTGTAAAACGCCAAGCCACTAGCACTCTTCGTTCTATGCAAACTTTGGCTCGTGTGCAATCCCAGATTCTTTCTACAAGGACCAGGATGTTCGAGGAGAATCAGGCTCTGCAAAGGCAGTTCTTACACAAGCATGCAAAAGAGCTCGAAAGCATGCGGATTGGAGAGGAATGGGATGATAGCCTGCAATCCAAAGAACAAATTGAAGCCAAGTTACTGCAAAAGTATGAGGCAGCCATGAGAAGAGAAAAAGCGCTGGCTTATGCATTCACTCACCAGCAAACATGGAAGAATTCATCCAGATCGATAAACCCAATGTTCATGGATCCAACGAATCCTTCATGGGGTTGGAGCTGGCTGGAACGATGGATGGCAGCTCGGACATTGGAGAGCCGAAGCACAATGGAAAAAGAAATGAACGATGATCGTTCACCTGTGAGAAGTTGTTGCCGCAGCATCGCTGGTGGAGAAATCAGCAAATCATATGCTCGTCACCAACTCAATTCTGAGAAGCATTCTCCAACACCAAGCCAAATCCCAGATTCACCTAGCTTCCAATCATATTCTACACCTTCAAAGCCAGCTTCCAGAAAACTCAAGAAGGCCAGCCCAAAGGACAGCTTTGTAATGGATGATGACAATAAAAGTGTGGCCAGTGCGGTGTCAGCGCGGTTCCGGCGGCACTCCATTGGTGGCGCGTCGGTGAGAGACGACGAGAGCCTTGCAAGCTCGCCGGCGGTTCCCAGTTATATGGTGGCGACTCAGTCTGCAAAAGCTAAGTGTAGGACGCAGAGTCCATTGGCACCTGAGAATGGCACGCCACAGAAAGAGAAAGGGTCTTTCGGAACAGCAAAGAAACGCCTTTCTTACCCGCCGTCTCCGGCGAGGCCGTGGAGGCATTCAAGTGGGCCACCAAAGGTAGAAAACAACTTAAATGCAGAAATCACTATGGAAAATGGTGGGGCTGCTTAA 1431 0.4759 MGRKGNWFSSVKKAFSPESEKKDKEDQKSSKSKKKWFGKQKLEISSDSYVGSEKTARSSAPPPEESKSYDVENEASQSQVHQVATSVDSERPIPAVQTPVVPIQAPKISRFAGKSREEVAAIKIQTTFRGYLERRALRALRGLVRLRTLMEGPIVKRQATSTLRSMQTLARVQSQILSTRTRMFEENQALQRQFLHKHAKELESMRIGEEWDDSLQSKEQIEAKLLQKYEAAMRREKALAYAFTHQQTWKNSSRSINPMFMDPTNPSWGWSWLERWMAARTLESRSTMEKEMNDDRSPVRSCCRSIAGGEISKSYARHQLNSEKHSPTPSQIPDSPSFQSYSTPSKPASRKLKKASPKDSFVMDDDNKSVASAVSARFRRHSIGGASVRDDESLASSPAVPSYMVATQSAKAKCRTQSPLAPENGTPQKEKGSFGTAKKRLSYPPSPARPWRHSSGPPKVENNLNAEITMENGGAA 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1084 476 Pfam Protein of unknown function (DUF4005) 390 457 IPR025064 -
Lele08g1084 476 Pfam IQ calmodulin-binding motif 120 138 IPR000048 GO:0005515
Lele08g1084 476 MobiDBLite consensus disorder prediction 414 476 - -
Lele08g1084 476 SMART iq_5 116 138 IPR000048 GO:0005515
Lele08g1084 476 MobiDBLite consensus disorder prediction 319 364 - -
Lele08g1084 476 MobiDBLite consensus disorder prediction 72 86 - -
Lele08g1084 476 MobiDBLite consensus disorder prediction 45 62 - -
Lele08g1084 476 MobiDBLite consensus disorder prediction 321 349 - -
Lele08g1084 476 MobiDBLite consensus disorder prediction 15 41 - -
Lele08g1084 476 ProSiteProfiles IQ motif profile. 117 145 IPR000048 GO:0005515
Lele08g1084 476 MobiDBLite consensus disorder prediction 1 89 - -
Lele08g1084 476 PANTHER IQ-DOMAIN 5-RELATED 1 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1084 Lele-ChrLele08 6840740 6842545 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g1084 1 476 IQD Protein Family AT5G03040 51.215 1.03e-142 415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele08g1084 08 6840740 6842545 Lele14g1743 14 24546908 24553098 CCT
Lele08g1084 08 6840740 6842545 Lele15g0610 15 3574850 3576806 CCT
Lele08g1084 08 6840740 6842545 Lele16g0622 16 3483575 3491295 CCT
Lele08g1084 08 6840740 6842545 Lele08g1084 08 6840740 6842545 ECH
Lele05g1232 05 7710209 7712937 Lele08g1084 08 6840740 6842545 hybridization
Lele06g1097 06 6822036 6826112 Lele08g1084 08 6840740 6842545 hybridization