Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1072 ATGCTACTTAGAGTCAATGCACTTGTTTCTGGCTTCAGTGTTAATTACATTTTTGTGAAGACTCTGACTGGCAAGACTATCACTCTGGAGGTGGAGAGCTCGGACACCATATATAATGTCAAGGCAAAGATTCAGGACAAGGAGGGAATTCCACCTGACCAACAACGTCTGATCTTCGCCGGGAAACAACTTGAAGATGGACGCACTCTCTCTGATTATAACATTCAGAAGGAGTCTACCCTTCACCTTGTACTCAGGCTGCGTGCTGGAGATGTGAAATGA 282 0.4504 MLLRVNALVSGFSVNYIFVKTLTGKTITLEVESSDTIYNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRAGDVK 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1072 93 PRINTS Ubiquitin signature 67 88 IPR019956 -
Lele08g1072 93 PRINTS Ubiquitin signature 25 45 IPR019956 -
Lele08g1072 93 PRINTS Ubiquitin signature 46 66 IPR019956 -
Lele08g1072 93 SUPERFAMILY Ubiquitin-like 11 90 IPR029071 -
Lele08g1072 93 SMART ubq_7 15 86 IPR000626 GO:0005515
Lele08g1072 93 PANTHER UBIQUITIN 17 90 - -
Lele08g1072 93 FunFam Polyubiquitin 5 15 90 - -
Lele08g1072 93 ProSiteProfiles Ubiquitin domain profile. 15 90 IPR000626 GO:0005515
Lele08g1072 93 CDD Ubl_ubiquitin 16 90 - -
Lele08g1072 93 ProSitePatterns Ubiquitin domain signature. 41 66 IPR019954 -
Lele08g1072 93 Gene3D - 15 93 - -
Lele08g1072 93 Pfam Ubiquitin family 17 88 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1072 Lele-ChrLele08 6793779 6794502 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g1072 17 90 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 95.946 2.01e-47 145