Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1071 ATGGGACATAGACATTTATATAGCATATCTCAGATGCTTGGGAGTGAGCAGGAGCAGGATTGGAATTATATGCATACTGATCAGCATAATGTGCAACTAGGTAGGGCTAGCACTTCAGAGAACGGTTCTTTTATTTATCCACTAGAAAATATGTCTATAGATGGCAGCTCTTTGGCTGCTTCTTGGAACAATGCCACAATGCCAAATGGATATGCGCCCTCAAGTATCAACGTTGAATTACCCCCTCATCAATCAGATGCATCAAGATCTTCTCATGATCATTCTTTGCGTTCATCAAATCCTGGAGCCTTTTTCACCGTTTCTGAAAACTATGCTCACCAGCCTTCTTCCAATTATGATAGGCAAGCATTTCATGTTGCCGATGGTGGTTTCTTTGATTTTACAATGGGAAATGGAAGAGGGCCTCACAAAAGAAAGAGCCCTGGAATTCCTTCAGTATGTGAGAGAGGCAGCACAAGCAGATATTTCAATGCAGGAAGCTCAACTGATCTCCCCATGTCTTCAGAAATAAGGCAGGAGAAGTCAAGCTTGGATTTTCAATGTCTGCCTTGGGATCATGTTACTATGACACCCCCCTTCAGAGGCAGTGGCCTTTCAATCAGGGGTGAGGGTTCTTTAAGGAATGTTAGAAGTCGTTCTGCACTTGATTTGGAATCCGACCTTGCTATGACGCATTTATCTAGCAACCATTTGCACAACTTATCTTCTCGCCCGTCCACTGACCATTCTAGCGCAGTGGGTCTTTCTGGTCATAGCTCTAGTACTATGACAAGGGACTGGAGCCAAATGAACATGTCTCCTGCTCATGGGAGGGTATTATTATCTGAATCAAGTGGATATAATCATGAACCAAGTCGCTTGCTAGTTGGAAGTCGTGTTAGTAATGCTTCGGTGGATGCTGGGAGTTACCATCATGAATATAATACAAGCATAAATCCTACTGTTCCTCAAAGTTTTCACAGTAACCTCACTCACCCTGCTAGGGGCGTTCGAAGTAACTATTCCCAAAGATCTACTCCAATACCAACTCCAACTTTTAGAGCCTCTTCAAGCTCATGTGTGGAACATATGGTGCCTTCAGATGGTGGATTGCACATGGGAGCTGAAGGTTTTATGTCTAGGCATCCAAGACCATTGACTGCCATCAGTTGGCGGAATAGTGACAGAAATGGGAGGTCAAGGATATCTAGCGAGAGATATCAATCATTGGCTGATGAGGCTATTCTTCATGATCGATTTTCCTCTGAGGGTTTCGTGGTTGTTGATCGTGCACGGCTATATGGTTCTCGAAATATGATTGATCAGCATAGAGAGATGAGGATGGACATAGACAACATGAGTTATGAGGAATTACTTGCTCTGGGAGAGAGGATCGGTCATGTCAGCACAGGATTGTCTGAGAACATGATTTCCAAGTGTTTGACAGAATCAATATATTGCTCATCTGAGCTGAGTCAAGAGGAAGGAAGTTGTGTAATCTGCCTGGAAGAGTACAAGTACATGGACGATGTTGGGACACTGAGAAGTTGTGGTCATGACTACCATGTGAGCTGCATTAGAAAGTGGTTATCAATGAAGAACGTATGTCCTATCTGCAAAGCTTCTGCTCTTCCTGATGATATGAAGGATAGATAA 1656 0.4336 MGHRHLYSISQMLGSEQEQDWNYMHTDQHNVQLGRASTSENGSFIYPLENMSIDGSSLAASWNNATMPNGYAPSSINVELPPHQSDASRSSHDHSLRSSNPGAFFTVSENYAHQPSSNYDRQAFHVADGGFFDFTMGNGRGPHKRKSPGIPSVCERGSTSRYFNAGSSTDLPMSSEIRQEKSSLDFQCLPWDHVTMTPPFRGSGLSIRGEGSLRNVRSRSALDLESDLAMTHLSSNHLHNLSSRPSTDHSSAVGLSGHSSSTMTRDWSQMNMSPAHGRVLLSESSGYNHEPSRLLVGSRVSNASVDAGSYHHEYNTSINPTVPQSFHSNLTHPARGVRSNYSQRSTPIPTPTFRASSSSCVEHMVPSDGGLHMGAEGFMSRHPRPLTAISWRNSDRNGRSRISSERYQSLADEAILHDRFSSEGFVVVDRARLYGSRNMIDQHREMRMDIDNMSYEELLALGERIGHVSTGLSENMISKCLTESIYCSSELSQEEGSCVICLEEYKYMDDVGTLRSCGHDYHVSCIRKWLSMKNVCPICKASALPDDMKDR 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1071 551 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 140 544 IPR045191 GO:0061630
Lele08g1071 551 MobiDBLite consensus disorder prediction 336 355 - -
Lele08g1071 551 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 463 544 IPR013083 -
Lele08g1071 551 SUPERFAMILY RING/U-box 488 545 - -
Lele08g1071 551 SMART ring_2 498 539 IPR001841 -
Lele08g1071 551 FunFam E3 ubiquitin-protein ligase MBR2 isoform A 463 544 - -
Lele08g1071 551 MobiDBLite consensus disorder prediction 73 99 - -
Lele08g1071 551 Pfam Ring finger domain 497 540 IPR001841 -
Lele08g1071 551 ProSiteProfiles Zinc finger RING-type profile. 498 540 IPR001841 -
Lele08g1071 551 MobiDBLite consensus disorder prediction 238 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1071 Lele-ChrLele08 6791165 6793620 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g1071 1 550 C3H Transcription Factor Family AT2G37150 41.725 2.11e-108 333
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele08g1071 08 6791165 6793620 Lele08g1071 08 6791165 6793620 ECH
Lele05g1220 05 7655945 7664289 Lele08g1071 08 6791165 6793620 hybridization
Lele06g1087 06 6780639 6783827 Lele08g1071 08 6791165 6793620 hybridization