Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1067 ATGCTATCTGGTGACCCCTTTTCCTTATCCTCTTCCATCGGAGGCTTCCCTCCTGAACCCAACCCAAACCCTAACCCTAAACTCAACCCCCCTCCCCTCCCTAAGAAGAAAAGGAATCTCCCAGGAACACCAGATCCAGATGCGGAAGTCATCGCTCTCTCGCCTAAGTCTCTCATGGCGACCAACCGATTCATCTGTGAAATATGCAACAAAGGTTTCCAGAGAGACCAAAACCTGCAGCTTCACCGGAGGGGACACAACCTCCCATGGAAGCTGCGACAAAGGTCGAACAAGGAGGTCCGGAAGAAGGTGTACATATGCCCTGAGAAGACATGCGTACACCACGACCCTTCCAGAGCATTGGGGGACCTCACCGGGATAAAGAAGCATTACAGCAGAAAACATGGGGAGAAGAAATGGAAGTGCGACAAGTGTTCGAAGAAATACGCAGTCCAGTCCGATTGGAAAGCTCACACAAAAACTTGTGGTACTAGAGAATATAAGTGCGACTGTGGTACTCTCTTCTCTAGGAAGGATAGTTTCATCACCCACAGAGCTTTCTGCGATGCCTTGACAGAAGAGGGTGCGAGACTCACTTCAGTTGGTACGTCGGATTTAAATTTTAAAAACGAAGAGATCAGTGTGATGAATTCTAACTCTCAGCTTAGCTCGGCGCATGGATTTGGCATTTCGCAATTCGGCGCAAATGGGTTTCGTTCAGAATTTGATGGAATGGGCATGAGTATGGTGGGTGGTGCTGACCAGCAAATGAGGCCAAACTTGTCGCTGTGGTTGAACCAGCTGGGAAATAATCCTTGCATCAATAATAATCCTCTTGAAGTTGGACCTAATTCTGGTCTTTTTGTGTCTTCTTCAAGTTCTTCAGGTTTGCCCGAGATCAATATGCAAATGCCTCAACCTAATAATGCCTTTGCTCCTTCTTCTTTGTCCAATTATTCCTCACCGTCACTTCCTATCGGGAAAAAAGGAGAAAGTAGTGGAACTGGAAACTTAGTATCTATTTATAATTCAGACGCTCGAAACAACCAATCAAAGCCAGCTTCTCCCATGTCAGCCACTGCACTTCTCCAGAAAGCGGCTCAGATGGGTTCAACCAGAAGCAGCAACCCTTCCATCTTTAGCGGCAGTTTTGGAGTAATGAGCTCGTCTTCTTCCCAGACTACGGCAAGTCTCGAAAATAACGCGAACCAGAACCGTAACAACGAGCTGAACCAAGTGTATCAGAGTATGAAACATTCACAGAATTTTAGTTCAAGTAGTAGTGGTGTCGGTGCGTTGGGGATAAGCAATAACTTCAGCTCATTGACGCATTCGTCCAACAGTACTGGTCTTGATGAGCTTGTGTCGCAATCCCATGGAAGACAAAGTAACAAACAAGCGCAAGTGAAGCTGCATCCTGATCATTCGAACACTGGGGAACATGGTTACACCAGAGATTTTCTGGGAGTAAGCGGGGCAGGAGGAGCTGGCTCCCCTTTCCTTCCCCAAGAGCTGGCCAAATTTGCTTCCATTGCCTCATCCATGGGAATGTCTCAGTTCCCGAGTACTGCTACTCAGTAA 1581 0.4725 MLSGDPFSLSSSIGGFPPEPNPNPNPKLNPPPLPKKKRNLPGTPDPDAEVIALSPKSLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVRKKVYICPEKTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHTKTCGTREYKCDCGTLFSRKDSFITHRAFCDALTEEGARLTSVGTSDLNFKNEEISVMNSNSQLSSAHGFGISQFGANGFRSEFDGMGMSMVGGADQQMRPNLSLWLNQLGNNPCINNNPLEVGPNSGLFVSSSSSSGLPEINMQMPQPNNAFAPSSLSNYSSPSLPIGKKGESSGTGNLVSIYNSDARNNQSKPASPMSATALLQKAAQMGSTRSSNPSIFSGSFGVMSSSSSQTTASLENNANQNRNNELNQVYQSMKHSQNFSSSSSGVGALGISNNFSSLTHSSNSTGLDELVSQSHGRQSNKQAQVKLHPDHSNTGEHGYTRDFLGVSGAGGAGSPFLPQELAKFASIASSMGMSQFPSTATQ 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1067 526 MobiDBLite consensus disorder prediction 444 481 - -
Lele08g1067 526 Gene3D Classic Zinc Finger 43 116 - -
Lele08g1067 526 ProSitePatterns Zinc finger C2H2 type domain signature. 66 86 IPR013087 -
Lele08g1067 526 MobiDBLite consensus disorder prediction 17 39 - -
Lele08g1067 526 MobiDBLite consensus disorder prediction 444 473 - -
Lele08g1067 526 FunFam protein indeterminate-domain 12-like 43 111 - -
Lele08g1067 526 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 26 503 IPR031140 -
Lele08g1067 526 Pfam Zinc-finger double-stranded RNA-binding 64 86 IPR022755 -
Lele08g1067 526 SUPERFAMILY beta-beta-alpha zinc fingers 63 160 IPR036236 -
Lele08g1067 526 MobiDBLite consensus disorder prediction 1 16 - -
Lele08g1067 526 MobiDBLite consensus disorder prediction 1 48 - -
Lele08g1067 526 ProSiteProfiles Zinc finger C2H2 type domain profile. 64 86 IPR013087 -
Lele08g1067 526 FunFam protein indeterminate-domain 5, chloroplastic-like 118 197 - -
Lele08g1067 526 SMART c2h2final6 64 86 IPR013087 -
Lele08g1067 526 SMART c2h2final6 140 160 IPR013087 -
Lele08g1067 526 SMART c2h2final6 105 135 IPR013087 -
Lele08g1067 526 Gene3D Classic Zinc Finger 118 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1067 Lele-ChrLele08 6767999 6769803 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g1067 1 245 IDZ Gene Family AT5G03150 65.836 9.11e-120 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele08g1067 zf-C2H2_jaz 7.8e-05 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele08g1067 08 6767999 6769803 Lele08g1067 08 6767999 6769803 ECH
Lele05g1217 05 7638372 7640164 Lele08g1067 08 6767999 6769803 hybridization
Lele06g1083 06 6757159 6758960 Lele08g1067 08 6767999 6769803 hybridization