Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1063 ATGGCAATCTTCCAGTCCCTCATCAATGGTGTTCCTCGGTGGAGGCTCACGCAATTCCATTATGCTCGCCACCCAAACCTACCGAAAGATTCCATCTTTCTTTTTCTCTTTCCCGGTGCTTCTCTATCAATGCTCTCCGCATTGGTTCGCCTCCATGTTTCATCCATCAGTCCAATCCTTCATAACAAGTCTGTAGCTCCCTCCGCGACAAGCCCTGAATCTTCATATGCGCCAAATCTCGGATTTGTTTTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCATGTGACGTGTGCTCGGGGCGTCTGGATATTCTTCTTCATTTCTCGCAATTTGAAAGAAGCATCTCATTCCATGGGTAACATAGGAAGTGGCAGCGCTAACGGTCGACGGAGAAGCAATAGCAGACGGAGTCATCCGCCGCCGCCGGTTAGGCCGCAGCCAGAGATCGCGTCGAATCGGCCTGTGCATCCAGTATCTACACCTCAGACATCGCAATACCCAAACTCGAATCCTTCCCCGTATTTCCAGTACCCAGGTCACTATTCCGCACCCCATCAGGCTATGCCGGCGCCTTTGCCGGCTCCTCTCGATCACCACCATCGTGCGAGGCCTCATCCACAAACGGACCCATCGTGGACGGGTGCCAATTACCATTGCGGGCCTGCTATGCCTCTGCCTCCACCATATGTAGAGCATCAGAAGGCGGTTACCATAAGGAACGATGTTAATGTCAAGAAGGAGACTCTAAGGATTGAACCCGATGAGCAAAGTCCTGGGCGGTTCCTTGTTGCATTCACATTCGATGCCACCGTTGATGGGAGCATTACCATTCTTTTCTTTGGTAAGGAAGATGGTAGCTGCAACCTCACGCCAATGAAGCAAAATATTCTGGCCCCCGTAACTGTAAGTTTCCAGCAAGGTCTCGGCAAGCAGTTTAGGCAGCCAATTGGAACTGGTATTGACTTTTCAATATTTGAGGAGTCAGAATTATCAGGAGTGGGTGGAATAGATGTGTTCCCTCTAGCAGTGAAGGCAGATGCATCCTGTGATAAACAAGATGGATCAAATGAAAATTTAACATCTGGTAACAGAAACTCTCAGATAACTCTAGCAGCATTTGAGAAGGAGAAAGGAGAATTCCGGGTAAAGGTAGTTAAGCAGATCTTATGGGTAAATGAAATGAGGTATGAACTGCAGGAGATATATGGTGTTGAAAATTCAGTGGAGAGTGACTTGGACGAGAATGATTCTGGAAAGGAGTGTGTCATCTGCCTCTCAGAGCCACGAGACACAACTGTTCTTCCCTGCAGACACATGTGCATGTGTAGTGGGTGTGCTAAGGTTCTGAGGTTTCAGACGAATAGATGCCCAATTTGCAGACAGCCAGTTGAGAAGCTTTTGGAGATGAAGCTGGACATTTCAGGCCATGGTGGGGATGTGTTTGGGTAG 1455 0.4825 MAIFQSLINGVPRWRLTQFHYARHPNLPKDSIFLFLFPGASLSMLSALVRLHVSSISPILHNKSVAPSATSPESSYAPNLGFVFLLLLLLLLLLLHVTCARGVWIFFFISRNLKEASHSMGNIGSGSANGRRRSNSRRSHPPPPVRPQPEIASNRPVHPVSTPQTSQYPNSNPSPYFQYPGHYSAPHQAMPAPLPAPLDHHHRARPHPQTDPSWTGANYHCGPAMPLPPPYVEHQKAVTIRNDVNVKKETLRIEPDEQSPGRFLVAFTFDATVDGSITILFFGKEDGSCNLTPMKQNILAPVTVSFQQGLGKQFRQPIGTGIDFSIFEESELSGVGGIDVFPLAVKADASCDKQDGSNENLTSGNRNSQITLAAFEKEKGEFRVKVVKQILWVNEMRYELQEIYGVENSVESDLDENDSGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVEKLLEMKLDISGHGGDVFG 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1063 484 SUPERFAMILY RING/U-box 422 468 - -
Lele08g1063 484 FunFam probable E3 ubiquitin-protein ligase LOG2 407 472 - -
Lele08g1063 484 SMART ring_2 423 461 IPR001841 -
Lele08g1063 484 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 422 462 IPR045195 -
Lele08g1063 484 ProSiteProfiles Zinc finger RING-type profile. 423 462 IPR001841 -
Lele08g1063 484 PANTHER MAHOGUNIN 120 472 IPR045194 GO:0061630
Lele08g1063 484 MobiDBLite consensus disorder prediction 119 211 - -
Lele08g1063 484 Pfam Zinc finger, C3HC4 type (RING finger) 421 467 - -
Lele08g1063 484 MobiDBLite consensus disorder prediction 155 178 - -
Lele08g1063 484 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 404 472 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1063 Lele-ChrLele08 6748344 6751455 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g1063 220 442 C3H Transcription Factor Family AT3G09770 59.649 1.93e-90 278
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele08g1063 08 6748344 6751455 Lele08g1063 08 6748344 6751455 ECH
Lele05g1213 05 7617177 7619920 Lele08g1063 08 6748344 6751455 hybridization
Lele06g1080 06 6734754 6736765 Lele08g1063 08 6748344 6751455 hybridization