Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1056 ATGATTGCGTTTAAGGATTCCAAAGAAAAACTGAAAGAGGTGGTGGACAAGTGTTTGGATGCTCAGCTATGGCATGCTTGTGCTAGTGGGATGGTTCAAATGCCATCAGTTAATAGTAAAGTTTTTTACTTTCCTCAAGGTCATGCAGAGCATTCATGTGCAACAGTGGACTTCAACACTTGTCCAAGGTTCCACCTCATATTCTATCTTCTTCCTCTTAATGCAAATGAAGTTGATTGTGAAGGTGATAGAATTGACGAAATGAATGGTTCTGAAACGCAAAATAAAGCTGCTTCATTTGCAAAAACCTTAACACAATCAGATGCCAACAATGGTGGCGGCTTCTCTGTTCCTAGATATTTTGCTGAGACAATTTTCCCTCGCTTAGACTACTCTGCAGATCCTCCCGTTCAAACCATCCTTGTTAAAGATGTTCATGGAGGAACATGGAAATTCAGGCACATTTATAGAGGCACACCGAGGCGCCATCTCCTTACAACAGGATGGAGCACTTTTGTAAATCATAAAAAGTTGGTTTCTGGTGATCCTATTGTATTTTTAAGGGCAAAAAATGGAGATCTCTGTGTTGGAATTCGACGAGATAAAAGAGGAACCGGTGGAATTCCAAACTCTTATGATAACAGGTTACTGAGAAATGTTAATAGCAATGGATTGAGCTCGAGTGAGGATGCTATGGGAAGAATCAGAAGAGGTAAAGTAAGGGTCGAAGCAGTGGTTAAAGTTGCAATTCTTGCAGCTAAAGGTCAGCCATTTGAGGTTGATTATTACCCGAGGACAAGTACTCCGGAGTTCTGTGTGAAGGCCTCCTTGGTTATAGCAGCTCTTCAGATTAGGTGGTTCTCTGGAATTAGGTTGAAGATGGCCTTTGAAACTGACGATTCCTCGCGTATAAGTTGGTTCATAGGAACTATATCTTCAAATCAAGTTGCTGATCCACTTCGCTGGCCTGATTCCCCTTGGAGGCTTCTCCAGGTTAGATGTGAGGAGCCAGATCTGCTACAGAATGTGAAAAGGGGAGCCAGTCATGCTTATTATGGTCTATCCTTATCTGATCTCCACCTCAATGAACTGCAATCCAGTGTTTTCCTGACTAGTTTTCAGCCTCCTTATCACCCTGCATCACCCTTGAGGATCCTCAATAACCCCACAGTGAAAGAACTTAGCACGAGTAACAACATATCTTGTGTAATACCTTTGGAATGTTCTGCTCAATCTTCAAAGAAACAGGACGATATGAAGACAACCCATCATCAGCTTATGCTTTTTGGTAGAACTATTCTTACAGAAAATAGTTCATCACATGGAAATGCTGATAACTTGACCAAGTTTTCTGATCTCCAATATGACAAGGATAATTTAGAAACTGAAAAATCCGAAATCGTGAACCGGGTTCTTTACCATGATCTAAGGGGCAGTCATAACATTGGTGATGATGAACCATTCAGAATTGGAATTAGGGTTTCAGGCCGTGTGACTGAGTCGAAGATGATCGAGGTCGTCTTGAACGATCGATTGGGTAAGAAGGTCAGGGTGAAATGCAACGATGATGACACCATAGGCGACCTGAAGAAGCTGGTGGCGGCTCAGACCGGCACTAGAGCTGACAAAATTCGCATTCAGAAGTGGTACACCATTTACAAGGATCATATCACTCTGAAAGATTACGAAATTCACGATGGCATGGGCCTCGAACTCTACTACAATTAA 1728 0.4213 MIAFKDSKEKLKEVVDKCLDAQLWHACASGMVQMPSVNSKVFYFPQGHAEHSCATVDFNTCPRFHLIFYLLPLNANEVDCEGDRIDEMNGSETQNKAASFAKTLTQSDANNGGGFSVPRYFAETIFPRLDYSADPPVQTILVKDVHGGTWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVSGDPIVFLRAKNGDLCVGIRRDKRGTGGIPNSYDNRLLRNVNSNGLSSSEDAMGRIRRGKVRVEAVVKVAILAAKGQPFEVDYYPRTSTPEFCVKASLVIAALQIRWFSGIRLKMAFETDDSSRISWFIGTISSNQVADPLRWPDSPWRLLQVRCEEPDLLQNVKRGASHAYYGLSLSDLHLNELQSSVFLTSFQPPYHPASPLRILNNPTVKELSTSNNISCVIPLECSAQSSKKQDDMKTTHHQLMLFGRTILTENSSSHGNADNLTKFSDLQYDKDNLETEKSEIVNRVLYHDLRGSHNIGDDEPFRIGIRVSGRVTESKMIEVVLNDRLGKKVRVKCNDDDTIGDLKKLVAAQTGTRADKIRIQKWYTIYKDHITLKDYEIHDGMGLELYYN 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1056 575 Pfam Auxin response factor 251 331 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lele08g1056 575 Gene3D - 98 201 IPR015300 -
Lele08g1056 575 Gene3D - 492 575 - -
Lele08g1056 575 SUPERFAMILY Ubiquitin-like 501 575 IPR029071 -
Lele08g1056 575 FunFam Auxin response factor 98 202 - -
Lele08g1056 575 ProSiteProfiles B3 DNA-binding domain profile. 100 202 IPR003340 GO:0003677
Lele08g1056 575 Pfam B3 DNA binding domain 100 200 IPR003340 GO:0003677
Lele08g1056 575 CDD Ubl_UBL5 503 573 - -
Lele08g1056 575 ProSiteProfiles Ubiquitin domain profile. 504 575 IPR000626 GO:0005515
Lele08g1056 575 Gene3D - 286 347 - -
Lele08g1056 575 SMART B3_2 100 202 IPR003340 GO:0003677
Lele08g1056 575 CDD B3_DNA 99 200 IPR003340 GO:0003677
Lele08g1056 575 SUPERFAMILY DNA-binding pseudobarrel domain 93 204 IPR015300 -
Lele08g1056 575 FunFam Ubiquitin-like protein 5 503 575 - -
Lele08g1056 575 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 351 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1056 Lele-ChrLele08 6706484 6710176 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g1056 11 376 B3 DNA Binding Superfamily AT4G30080 57.606 4.54e-143 427
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lele08g1056 B3 6.3e-21 CL0405