Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1044 ATGAAGAGAAAGTTTCTGAGAGGGTGGCTTAACAAGTGGAAGAAAATGAAGAGTCGAGTGATACCTTGTTGTGCCTGTGAGTGTTGCAGTAAATGGGCCTTATGGTCGTCGTCGTCCATGCATGAAAGAAGATCGATCCCAAGTGATGTACCAAAGGGTCACCTTGTTGTGTATGTAGGGGAGAATTTCAAGAGATTTGTAATAAAGGTCACATTACTCAACCATCCACTCTTCAAGGCATTGCTGGATGAAGCTCGGGAAGAGTACGATTTTGTTTCTTATTCAAAACTTTGCATCCCTTGCGACGAGCGTCTTTTCCTCAACGTCCTTCGCTGCGCTAGCTCTCCCAAGAACAGAGGAGCGAGTCTTTGTATTTGA 378 0.4471 MKRKFLRGWLNKWKKMKSRVIPCCACECCSKWALWSSSSMHERRSIPSDVPKGHLVVYVGENFKRFVIKVTLLNHPLFKALLDEAREEYDFVSYSKLCIPCDERLFLNVLRCASSPKNRGASLCI 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1044 125 Pfam Auxin responsive protein 12 112 IPR003676 GO:0009733
Lele08g1044 125 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 33 108 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1044 Lele-ChrLele08 6628604 6628981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g1044 48 115 Calmodulin-binding Proteins AT4G34750 52.778 6.60e-22 83.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele08g1044 08 6628604 6628981 Lele08g1044 08 6628604 6628981 ECH
Lele05g1192 05 7484807 7485178 Lele08g1044 08 6628604 6628981 hybridization
Lele06g1062 06 6599526 6601365 Lele08g1044 08 6628604 6628981 hybridization