Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele08g1016 | ATGTACGCGATCGGAGGCAGCGGGAACCCTACCATCAACAGCCAGGGGAATCGGTACACGGCGCCGGTGAATCCGTTCGCGAAGGAGGTGACCAAGAGAGTGGACACGGGGGAAGGGAAGTGGAAGGGGTGGAATTGGAGATCGGAAGGCGACATGATGGTAAATGGAGCATTCTTCGTTGCTTCCGGCGAAGGGGTGGAGTTCAAGTACGAGAAGGCCTACAGTGTGGAGCCAAAGTCCGCCGATCACATTGATTTCCTCGTAATGCACGCCGGCGTGCTCGGCGTTTCCAGGGACAACAATCTGGGGATGTGGAGCAGGGGTCCGAACGGAGAAGGGGATGAGATAACAGTGACAGGCCCTGAGTACACCGACGATATGGCGGGGACGACGAGGTTGATGCCGGAGCCGTATAGAGTGTGCATGATATGGTGTTTGATAGCATTCTTGTGGGGTTTGTTATGTGAATTGTGA | 474 | 0.5549 | MYAIGGSGNPTINSQGNRYTAPVNPFAKEVTKRVDTGEGKWKGWNWRSEGDMMVNGAFFVASGEGVEFKYEKAYSVEPKSADHIDFLVMHAGVLGVSRDNNLGMWSRGPNGEGDEITVTGPEYTDDMAGTTRLMPEPYRVCMIWCLIAFLWGLLCEL | 157 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele08g1016 | 157 | SUPERFAMILY | Pectin lyase-like | 1 | 94 | IPR011050 | - | |
| Lele08g1016 | 157 | Gene3D | - | 1 | 95 | IPR012334 | - | |
| Lele08g1016 | 157 | PRINTS | Pollen allergen Amb family signature | 73 | 96 | IPR018082 | - | |
| Lele08g1016 | 157 | PRINTS | Pollen allergen Amb family signature | 44 | 68 | IPR018082 | - | |
| Lele08g1016 | 157 | PRINTS | Pollen allergen Amb family signature | 2 | 21 | IPR018082 | - | |
| Lele08g1016 | 157 | PANTHER | PECTATE LYASE 18-RELATED | 1 | 97 | IPR045032 | GO:0030570 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele08g1016 | Lele-ChrLele08 | 6465083 | 6465641 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele08g1016 | 1 | 133 | Polysaccharide Lyase | AT3G53190 | 69.343 | 6.60e-57 | 183 |