Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1013 ATGGACGATGAAAAGAGGGGAGGAAAGGGCCAAGAGGATCTATTGAGGAAGTACACGTGTCAAACTATGATGGGTCTCATTGTGATACAAGCTGACAAGAAACAGGACGGCGAATCTGGGATTCAACGGAAAGCAAGAGCAGAATCTGGAACGATGGAGTGCATCGTGGAGCCGCAGATGTCAGCCCGGGGATTTTCTCAACTAGATGACGGCTTTCATTCTGAGATGGGATATGGCAGCTACGGGTGCTCACACTATAGAAGGAGATGCAAGATAGTAGCACCTTGTTGCAATGAAATATTCGACTGCAGACATTGCCATAATGAATCCAAGAATTCGATTGAACTGGACCCTGTTGATCGCCATGACGTTCCTCGTCACAATTTAAAGAGGGTTATCTGTTCCTTGTGTAGCACCGAGCAAGATGTTCAACAGATGTGCACTCAGTGCGGTGTTTGCATGGGAAAGTACTACTGCTCCAAGTGCAAGTTTTTTGATGATGATGTATCAAAGAATCAGTACCATTGCAATGAATGTGGTATCTGCAGAATTGGAGGCGAGGAGAATTTTTTCCACTGCAACAAATGCGGATGTTGCTATTCAATATTGTTGAAGGACTCACACCGTTGTGTTGAAAAAGCTATGCATCACAATTGTCCTGTTTGCTTTGAGTTTCTTTTTGATACCACAAAAGACATTACTGTATTGCCATGTGGTCACTCTATCCATCTGGAATGTGTGAGAGAAATGGAGCAGCATTTCCAGTATTCTTGCCCTGTTTGCTCAAAATCTTTTTGTGATATGTCGCGCGTGTGGGAGAGACTGGATCATGAGGTTGCATCAACACCTATGCCAGAAATGTATCAAAATAAGATGGTCTGGATTCTGTGCAATGATTGTGGGGAAACATCAGAGGTGAGCTTTCACGTTTTGGCGCACAAGTGTTTAAAATGCAAATCCTACAACACTAGACTGACGCAAGGTGGACCTGCTTCATCATGCTCATCCAACGTTGAAGAGCTGCTGCAATGA 1032 0.4409 MDDEKRGGKGQEDLLRKYTCQTMMGLIVIQADKKQDGESGIQRKARAESGTMECIVEPQMSARGFSQLDDGFHSEMGYGSYGCSHYRRRCKIVAPCCNEIFDCRHCHNESKNSIELDPVDRHDVPRHNLKRVICSLCSTEQDVQQMCTQCGVCMGKYYCSKCKFFDDDVSKNQYHCNECGICRIGGEENFFHCNKCGCCYSILLKDSHRCVEKAMHHNCPVCFEFLFDTTKDITVLPCGHSIHLECVREMEQHFQYSCPVCSKSFCDMSRVWERLDHEVASTPMPEMYQNKMVWILCNDCGETSEVSFHVLAHKCLKCKSYNTRLTQGGPASSCSSNVEELLQ 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1013 343 SUPERFAMILY CHY zinc finger-like 79 154 IPR037274 GO:0008270
Lele08g1013 343 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 54 327 - -
Lele08g1013 343 ProSiteProfiles Zinc finger CHY-type profile. 76 152 IPR008913 GO:0008270
Lele08g1013 343 ProSiteProfiles Zinc finger RING-type profile. 219 262 IPR001841 -
Lele08g1013 343 Pfam Zinc-ribbon 266 324 IPR039512 -
Lele08g1013 343 SUPERFAMILY RING/U-box 216 268 - -
Lele08g1013 343 Pfam Ring finger domain 218 261 IPR001841 -
Lele08g1013 343 Pfam CHY zinc finger 83 164 IPR008913 GO:0008270
Lele08g1013 343 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 212 264 IPR013083 -
Lele08g1013 343 FunFam RING finger and CHY zinc finger domain-containing protein 1 290 334 - -
Lele08g1013 343 ProSiteProfiles Zinc finger CTCHY-type profile. 154 218 IPR017921 -
Lele08g1013 343 SUPERFAMILY Zinc hairpin stack 155 212 IPR037275 -
Lele08g1013 343 SMART ring_2 219 261 IPR001841 -
Lele08g1013 343 Gene3D - 290 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1013 Lele-ChrLele08 6448761 6453392 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g1013 81 328 C2H2 Transcription Factor Family AT3G18290 41.339 2.24e-55 193