Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1011 ATGCTTTGCTTTGAGGCAGTAACACAAGATCGATCCGGTTCAGATTCCCATGAATCAATACGGGGAAAATTGTATGCAGTGCATTTACCGACACCTAATGATTGGAAGAAGAAGGAAAGAAGAACCTTAATTATGGAGGTCACAGGCCAGGAACTTGTGGTGTGGAATAAGGATCATGAAACCCAAGTCATGAAGGGCAAGCGCACCAAGCGTTCCAGGCTACCCTCTCCACTCAGGCTATCCATGGCTTCTTCTTCTTCTAGCGCCGGCAGAACCAGCACCGACGACAATTCCGGCGGGTTATCATCAGTAGATATGGCTACAACCTCGACTGATCATCAATTGAGGGTGACCACCGAAGAAGAAGACATGGCTAACTGTTTGATCCTTCTGGCTCAAGGCCATGCCCGTAAAGAGCCCTCTTCTCACAACAACAACGATAAGGCTTCCTCTGGGCTATACGTTTATCAGTGCAAGACCTGTGATCGATGCTTCCCTTCGTTCCAGGCTCTTGGTGGACACAGAGCCAGCCACAAGAAACCAAAGCCAAACAATTCTGAAGAAAAGCTGCAATCTGTTGCATTTGCCAACGAAGAGGCTCGCGATCCGTGTGATCCGACGGGCCCAAGCTTCGTCCTCTCGTTGCAGATTTCAAATAAGTCTTCGTATAGCAGCAATAGTAACAGTAACAAGTCGAAAGTTCACGAGTGTTCTATATGTGGGGCTGAGTTCACCTCTGGGCAAGCTTTGGGGGGTCATATGAGGCGCCACAGAACATTGGTGAACAATTCTGCGACGTGCACGACGAATCATGATTCTGAACTCCAGCAGCAAGCCAATAACAACAAGCCCAAGAATGTTTTCAAGTTGGATTTGAATCTTCCCGCGCCAGAAGATGATCACAGAGAATCCAAGTTGCCGTTTCAGTCTCAAGAAAATGTTCTTGTTTTCTCCGCATCTTCTTTGGTGGATTGCCATTATTGA 984 0.4746 MLCFEAVTQDRSGSDSHESIRGKLYAVHLPTPNDWKKKERRTLIMEVTGQELVVWNKDHETQVMKGKRTKRSRLPSPLRLSMASSSSSAGRTSTDDNSGGLSSVDMATTSTDHQLRVTTEEEDMANCLILLAQGHARKEPSSHNNNDKASSGLYVYQCKTCDRCFPSFQALGGHRASHKKPKPNNSEEKLQSVAFANEEARDPCDPTGPSFVLSLQISNKSSYSSNSNSNKSKVHECSICGAEFTSGQALGGHMRRHRTLVNNSATCTTNHDSELQQQANNNKPKNVFKLDLNLPAPEDDHRESKLPFQSQENVLVFSASSLVDCHY 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1011 327 Gene3D Classic Zinc Finger 153 257 - -
Lele08g1011 327 Pfam C2H2-type zinc finger 155 181 - -
Lele08g1011 327 Pfam C2H2-type zinc finger 234 258 - -
Lele08g1011 327 ProSitePatterns Zinc finger C2H2 type domain signature. 158 178 IPR013087 -
Lele08g1011 327 PANTHER ZINC FINGER PROTEIN ZAT5 84 306 - -
Lele08g1011 327 SUPERFAMILY beta-beta-alpha zinc fingers 155 257 IPR036236 -
Lele08g1011 327 SMART c2h2final6 235 257 IPR013087 -
Lele08g1011 327 SMART c2h2final6 156 178 IPR013087 -
Lele08g1011 327 ProSiteProfiles Zinc finger C2H2 type domain profile. 235 257 IPR013087 -
Lele08g1011 327 ProSitePatterns Zinc finger C2H2 type domain signature. 237 257 IPR013087 -
Lele08g1011 327 ProSiteProfiles Zinc finger C2H2 type domain profile. 156 183 IPR013087 -
Lele08g1011 327 MobiDBLite consensus disorder prediction 62 110 - -
Lele08g1011 327 MobiDBLite consensus disorder prediction 78 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1011 Lele-ChrLele08 6434438 6436469 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g1011 58 327 C2H2 Transcription Factor Family AT5G03510 44.781 7.36e-62 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele08g1011 zf-C2H2_6 6.8e-10 CL0361