Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g1003 ATGGCATTGCCTTTGCGATCCCTCTTCGCCTCATCTCTGTTCCTTTCTCTTCTTCTTCCTCATCACGTTCATGCAGGCGTTCTTTCCCAGCCACGTTTTAAGCCCAGCCCTTGGAAACAAGCTCATGCCACTTTCTATGAAGGAGGCTCTTCAACATATGGAGGAGCATGTGGGTACGAGGATGTAGTGAAAGCAGGATACGGACTTGAAACAGCAGCATTGAGCCAAGTTCTGTACAAGGAAGGAGCAACATGTGGTGCATGCTACGAAATCCAATGTGTGAACTCACCATGGTGTAAACACATAAAACCTTCCATTTTCGTGACTGCCACCGATTATTGCCCTCCCAATTTCAACCTCCCCAGTGACAATGGAGGATGGTGCAACCCTCCACGCGAGCACTTCGACTTAGCTAAGCCTTCTTACCTTGACATTGCCGAGTACCAAGGTGGCATTGTCCCCATCAACTACCGCAGGGTGGCATGCAAGAGGCAAGGAGGCATTAGGTTCACCATAACAGGTAATCCATACTTCTATCTGGTGTCAGTGTGGAATGTGGGAGGAGCAGGGGATGTGGTGGGCGTGGAAGTGAAGGGAAGTAAGAAGGTGAAATGGACAGTTCTGAAGAGGAATTGGGGTCAGAAGTGGGACACCAATGCTGTGTTAGTGGGAGAGTCCTTGACGTTCCGTGTTAGAACAAGTGATGGAAGGGCCTCCACTTCGTGGCACGTCACTCCTGAGAATTGGCAGTTTGGGATTACCTACGAAGGCAAGAACTTCAAGTGA 786 0.4962 MALPLRSLFASSLFLSLLLPHHVHAGVLSQPRFKPSPWKQAHATFYEGGSSTYGGACGYEDVVKAGYGLETAALSQVLYKEGATCGACYEIQCVNSPWCKHIKPSIFVTATDYCPPNFNLPSDNGGWCNPPREHFDLAKPSYLDIAEYQGGIVPINYRRVACKRQGGIRFTITGNPYFYLVSVWNVGGAGDVVGVEVKGSKKVKWTVLKRNWGQKWDTNAVLVGESLTFRVRTSDGRASTSWHVTPENWQFGITYEGKNFK 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g1003 261 PRINTS Expansin signature 66 80 IPR002963 GO:0009664
Lele08g1003 261 PRINTS Expansin signature 166 178 IPR002963 GO:0009664
Lele08g1003 261 PRINTS Expansin signature 243 259 IPR002963 GO:0009664
Lele08g1003 261 PRINTS Expansin signature 142 155 IPR002963 GO:0009664
Lele08g1003 261 PRINTS Expansin signature 125 142 IPR002963 GO:0009664
Lele08g1003 261 PRINTS Expansin signature 106 116 IPR002963 GO:0009664
Lele08g1003 261 PRINTS Expansin signature 178 199 IPR002963 GO:0009664
Lele08g1003 261 PRINTS Expansin signature 214 235 IPR002963 GO:0009664
Lele08g1003 261 Pfam Expansin C-terminal domain 168 246 IPR007117 -
Lele08g1003 261 SMART dpbb_1 71 157 IPR007112 -
Lele08g1003 261 Gene3D - 166 260 IPR036749 -
Lele08g1003 261 Gene3D - 24 163 IPR036908 -
Lele08g1003 261 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 54 167 IPR007112 -
Lele08g1003 261 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 177 257 IPR007117 -
Lele08g1003 261 PANTHER EXPANSIN-A15 29 260 IPR002963 GO:0009664
Lele08g1003 261 Pfam Lytic transglycolase 71 157 IPR009009 -
Lele08g1003 261 SUPERFAMILY PHL pollen allergen 164 257 IPR036749 -
Lele08g1003 261 PRINTS Expansin/Lol pI family signature 37 52 IPR007118 GO:0005576
Lele08g1003 261 PRINTS Expansin/Lol pI family signature 75 93 IPR007118 GO:0005576
Lele08g1003 261 PRINTS Expansin/Lol pI family signature 150 166 IPR007118 GO:0005576
Lele08g1003 261 PRINTS Expansin/Lol pI family signature 205 219 IPR007118 GO:0005576
Lele08g1003 261 PRINTS Expansin/Lol pI family signature 243 257 IPR007118 GO:0005576
Lele08g1003 261 SUPERFAMILY Barwin-like endoglucanases 37 185 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g1003 Lele-ChrLele08 6401036 6402191 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g1003 3 261 Expansin Gene Family AT3G55500 57.795 1.16e-106 308