Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0996 ATGACTGTCAAGGAACTCTTCGATTCTGGTTTACTGGATGGGGTTTCAGTAGTTTATACAGGCGGGAAGGCTTCTGGCCTGCGGGGTGTTATTACAGATGGAGGGATCTTGTGCTCTTGTTTTCTGTGCAATGGGCGCAAGGTTATTCCACCTTCCCAATTCGAGATTCATGCTTGCAAATCATATAGGCGAGCAGCACAGTATATTTGCTTTGAAAACGGAAAGAGCCTGCTTGAATTATTGAGAGCATGCAGGGGAACTCCGCTCCTTACATTGGAGACGATAATTCAAAATTTTGTTTGTTCTCCACCTCAAGAGAAAAATTTTGCATGTAAAAAGTGCAAAGGATGTTTTCCCTTTTCACGAGTGAACAAAGTAGGGCCTATATGTAAAACTTGTGTGGAATCAAAGGAATCTGAAGCCAGTTTAATTGACGCGGTTGGCAAAAGAGTCAGGTCTCCCAGATCTGTTCCTGCCCCCAAACCGTTAAGTGATTCTGGACTGTGCAACTCATCACAAATTAACAAACATTGGAAGAAAAGAACAAGGACAACAAATCGGGTTAGTTGCTCAAAGTCTTCTGAGACTGCTTCTGTGCCTATCCCATCACGAAAGAAGTCTATGCAGAGGTCAACAAAAACTTCAGTAAAAGTGGAGGCCCCACTAATTTCATCAGACGCAAAGTGTTTATCTTCACAAAATAAGAGTCAATGGAAGATCACTAAAAAGGATCAGCGGTTACATAAATTAGTTTTTGAAGAAGGTGGATTGCCTGATGGAACAGAGGTAGCTTATTATGGACGTGGACAGAAATTGCTTGAGGGTTACAAAAAGGGATTTGGTATACTTTGTCGGTGCTGCAACACAGAGGTCAGCCCATCACAATTTGAGGTCCATGCAGGCTGGGCTTCTCACAGGAAACCTTATGCATACATCTACACTTCAAATGGGGTGTCTCTCCATGAATTGGCAATTTCTCTTTCAAAAGGCCGCAAGTACGCTGCAAAGGACAATGATGATGTTTGCATTATTTGTTTGGATGGTGGAAATCTGTTGCTTTGTGATGGATGCCCAAGGGCATTTCATAAAGAATGCGCATCTCTATCAAGCATTCCACGTGGTGACTGGTACTGTAAGTTTTGCCAAAACATGTTCCAGAGGGAAAGATTTGTCGCACGCAATGCCAATGCTGTGGCTGCTGGAAGGGTTGATGGGGTTGATCCTATTGAACAGATAACCAAGAGATGCATTCGCATTGTCCAAGACATTGAAGCTGAGCTGAGCGGCTGTGCTTTATGCAGGGGTTATGACTTCAACAAGTCAGGGTTTGGTTCTCGCACAATTATACTCTGTGACCAGTGTGAAAAGGAATATCATGTAGGCTGTTTGAGGGATCATAAGATGGCATATTTGAAGGAATTGCCAGAAGGAAATTGGTTTTGTTGCACGGATTGCAATAGAATACATTCTACTTTGCAGAAGTTCTTGGTTAGGCGGGCTGAGGAACTTCCTGACTCTCTCGTGGATGTTATAAAGACAAAGCAAAAGGAAAAAGGTTTGCAGTCTTTCAATGATATTGATGTAAGATGGAGGCTTCTTAATGGAAAAATTGCATCTCCTGAAACCAGGCCATTGCTGTCAGAGGCTGTTTCAATCTTTCATGAATGCTTTGATCCTATAGTTGATTCAACTAGTGGTCGTGACCTTATCCCAGCCATGGTTTTTGGAAGGAATGTGCGGAGTCAAGAGTTTGGAGGAATGTATTGTGCAATATTGTCGGTCAATTCAACTGTTGTATCAGCTGGCATGCTTCGAATTTTTGGTAAAGATGTGGCTGAACTTCCTTTAGTTGCAACAAGCAGTGATAATCATGGAAAGGGCTACTTCCAATTACTCTTCACCTGTATTCAGAGACTGCTGGCAATGTTGAACGTAAAGATGCTTGTGCTACCAGCTGCTGAAGAAGTAGAATCCATATGGACAGATAAATTTGGGTTCCGCAAGATGAAACCAGAGCAGATTAGCAATTGTAGGAAGAACTACAGTCAGATGGTGACATTCCAGGGGACTTCCATGCTTCAAAAAATGGTTCCGCCCTGTCAATTTTCAATGTGA 2115 0.426 MTVKELFDSGLLDGVSVVYTGGKASGLRGVITDGGILCSCFLCNGRKVIPPSQFEIHACKSYRRAAQYICFENGKSLLELLRACRGTPLLTLETIIQNFVCSPPQEKNFACKKCKGCFPFSRVNKVGPICKTCVESKESEASLIDAVGKRVRSPRSVPAPKPLSDSGLCNSSQINKHWKKRTRTTNRVSCSKSSETASVPIPSRKKSMQRSTKTSVKVEAPLISSDAKCLSSQNKSQWKITKKDQRLHKLVFEEGGLPDGTEVAYYGRGQKLLEGYKKGFGILCRCCNTEVSPSQFEVHAGWASHRKPYAYIYTSNGVSLHELAISLSKGRKYAAKDNDDVCIICLDGGNLLLCDGCPRAFHKECASLSSIPRGDWYCKFCQNMFQRERFVARNANAVAAGRVDGVDPIEQITKRCIRIVQDIEAELSGCALCRGYDFNKSGFGSRTIILCDQCEKEYHVGCLRDHKMAYLKELPEGNWFCCTDCNRIHSTLQKFLVRRAEELPDSLVDVIKTKQKEKGLQSFNDIDVRWRLLNGKIASPETRPLLSEAVSIFHECFDPIVDSTSGRDLIPAMVFGRNVRSQEFGGMYCAILSVNSTVVSAGMLRIFGKDVAELPLVATSSDNHGKGYFQLLFTCIQRLLAMLNVKMLVLPAAEEVESIWTDKFGFRKMKPEQISNCRKNYSQMVTFQGTSMLQKMVPPCQFSM 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0996 704 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 328 416 IPR013083 -
Lele08g0996 704 MobiDBLite consensus disorder prediction 187 217 - -
Lele08g0996 704 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 426 488 - -
Lele08g0996 704 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 328 405 - -
Lele08g0996 704 MobiDBLite consensus disorder prediction 185 217 - -
Lele08g0996 704 Pfam PHD-finger 342 383 IPR019787 -
Lele08g0996 704 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 585 670 IPR016181 -
Lele08g0996 704 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 426 488 IPR013083 -
Lele08g0996 704 SMART PHD_3 341 382 IPR001965 -
Lele08g0996 704 SMART PHD_3 429 486 IPR001965 -
Lele08g0996 704 ProSiteProfiles Zinc finger PHD-type profile. 339 384 IPR019787 -
Lele08g0996 704 PANTHER AUTOIMMUNE REGULATOR 1 696 - -
Lele08g0996 704 SUPERFAMILY FYVE/PHD zinc finger 332 386 IPR011011 -
Lele08g0996 704 SUPERFAMILY FYVE/PHD zinc finger 421 485 IPR011011 -
Lele08g0996 704 Pfam Tify domain binding domain 275 325 IPR032308 -
Lele08g0996 704 Pfam Tify domain binding domain 29 84 IPR032308 -
Lele08g0996 704 ProSitePatterns Zinc finger PHD-type signature. 342 381 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0996 Lele-ChrLele08 6323649 6331350 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g0996 2 702 PHD Transcription Factor Family AT2G36720 54.432 0.0 789
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lele08g0996 TDBD 1.3e-13 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1151 05 7210276 7219068 Lele08g0996 08 6323649 6331350 hybridization
Lele06g1011 06 6270076 6277317 Lele08g0996 08 6323649 6331350 hybridization