Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0988 ATGGCGAAATCGGTTTCTTCTGGCGAATCCTCCAACAAAACTCCACCGCCGGTTCCGGCACCGGCTCCTGATCACAAAAGTTGGGCTGACGAGGCGGAAGAAGAAGTTCCACAAGAAGCGAGTGCTGACACTGCGAGTTCGTCGACAGTCTTGTCGCTCAACAAAACTCCACCGCCGGTTCCGGCACCGGCTCCTGATCACAAAAGTTGGGCTGACGAGGCGGAAGAAGAAGTTCCACAAGAAGCGAGTGCTGACACTGCGAGTTCGTCGACAGTCTTGTCGCTTAACCCAATATTGGATATCCTGAGCGAGGTTACATCGGGCGATATTCCGTATACTTCAGCGAGTACCTTTGAAGATTTAAATCTAACCCCAGAGTTGCTAAAGGGATTGTATGTTGAGATGAAATTCCAGAAGCCTAGCAAGATTCAAGCTATCAGTTTGCCAATGATTTTGAACCCTCCTCACAAGGATTTGATCGCTCAGGCACATAATGGATCTGGCAAGACAACTTGTTTTGTTCTTGGGATGCTGAATCGTGTTGATCCTTCGGTGCCAGCCCCTCAGGCCCTTTGCATTTGTCCAACAAGAGAATTGGCTATTCAGGGATTAGTTCTGAATGTGCCATTCCCAGACAGCAGAGATTATATTCATGCATCAAAACGACCACCCATAATGGCGCAAGTAGTGACTGGGACTCCTGGCACGATTAAGAAATGGATGTCAAATAAGAAGCTGGGTGTAAGCAGATTAAAAATTTTAGTTTTTGACGAGGCTGATCAAATGCTTGCTGAGGATGGTTTTAAAGATGATTCCTTGAGGATGATGAAGGAAATAGAAAAAGTCAATCTTCATTCTCAGGTTCTTCTTTTTTCGGCTACCTTCAATGACACTGTCAAGAATTTTGTTTCAAGGGTAGTTAAGAAGGATCATAGTCAACTTTTTGTAAAGAAAGAAGAACTGTCTTTTAAGGCAGTGAAGCAATACAAGGTGAACTGTCCTGATGAGCTCTCTAAGATTGATGTGATCAGAGATTATATATTTGAGATAGGAGAGAATGTCGGGCAAACTATTGTATTTGTGCGCACAAGAAACAGTGCAAGTATGTTGCGTAAATCACTTGCTGATTTGGGTTATGAGGTTACTTCCATACAAGGTGCTCTTGACAATATTGAGAGAGACAAGATTGTTAAGGAGTTCAGGGATGGTTTGACTCAAGTGAATTTGGTTATCAATTACGATCTCCCTGTGAAACATACTGTTCAGTATACCCGTGAGCCAGAACCTGATTATGAAGGTCACCCAACCTTCAGGAGGTTTATTCCATTTGATTTCCTTCTCAACTCTCGCATTATATGGTCTCCTAAGCGTTGCCAGCTTAAGAGATGTGATTTCAGTGCTGTATTTAACTTGATATGTGGTGATAGGGATGAAATTCTGATGGAAAAAATTGAGAAACATTTTGGCACCCATGTAACTGAGATCGGAGGACCTGAGATCCCTGGAAGCCATTCGGACATGGCGACCTGCCTTCGAAGATCAGTGAAATTGCGCCCTCTGTTGCGTCGATCGGCGGTGGCCGATACCTCTCCTGTAATAGTAGTTACGGTCCCTTCCCTATCCGGTCATAGATGCGCTTCTTCTTTTTCCTCTTCCTCCTCATCGCCCTCGCCCCCGTCGTCATCCTCTGATAAATCTCCGAAGGTGGTGAAGAAGCTTGTTGATCGTCTTTCAGCTTTCATTGACGCTGTCCACGATCGCAAACTACCTCCTGAACTTCGAGGTCAGCGCAACAATGTTAGATCAGAAACTGATATCATCAACGTTGTGGAGCAAAGAATATGGCATTCCATGGAAGAAGGCCAATTCGAAAACTTGCCAGGGAAAGGCAAGCCGCTTAAGCTAGACACTAATCCTCATGCAGATCCAGCTGAAGATACCTTGTACAGAATCCTATCAAAAAATGGTTGTGCACCGGAGTGGGTTGAGCTTAACAAAGAAATAAGAACTAATATATCTGAATGGAGGGCCGCATTGGAAAAAGCTTGGATAAATAGATGCAGTGATAATCTTAAGTGGGTAGAGAGTTCAGAAGCTTTGAAAACGCAATTACGAGATATCAATAATAAGGTTTTCCGATATAATCTCATCGTCCCTTTTGGTAGGCAAATGTTTGGCCTTAATTGGGAGAAAGAGCTTGGTCGTTTAGAAGAATAA 2217 0.4393 MAKSVSSGESSNKTPPPVPAPAPDHKSWADEAEEEVPQEASADTASSSTVLSLNKTPPPVPAPAPDHKSWADEAEEEVPQEASADTASSSTVLSLNPILDILSEVTSGDIPYTSASTFEDLNLTPELLKGLYVEMKFQKPSKIQAISLPMILNPPHKDLIAQAHNGSGKTTCFVLGMLNRVDPSVPAPQALCICPTRELAIQGLVLNVPFPDSRDYIHASKRPPIMAQVVTGTPGTIKKWMSNKKLGVSRLKILVFDEADQMLAEDGFKDDSLRMMKEIEKVNLHSQVLLFSATFNDTVKNFVSRVVKKDHSQLFVKKEELSFKAVKQYKVNCPDELSKIDVIRDYIFEIGENVGQTIVFVRTRNSASMLRKSLADLGYEVTSIQGALDNIERDKIVKEFRDGLTQVNLVINYDLPVKHTVQYTREPEPDYEGHPTFRRFIPFDFLLNSRIIWSPKRCQLKRCDFSAVFNLICGDRDEILMEKIEKHFGTHVTEIGGPEIPGSHSDMATCLRRSVKLRPLLRRSAVADTSPVIVVTVPSLSGHRCASSFSSSSSSPSPPSSSSDKSPKVVKKLVDRLSAFIDAVHDRKLPPELRGQRNNVRSETDIINVVEQRIWHSMEEGQFENLPGKGKPLKLDTNPHADPAEDTLYRILSKNGCAPEWVELNKEIRTNISEWRAALEKAWINRCSDNLKWVESSEALKTQLRDINNKVFRYNLIVPFGRQMFGLNWEKELGRLEE 738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0988 738 Gene3D - 320 426 IPR027417 -
Lele08g0988 738 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 150 313 IPR014001 -
Lele08g0988 738 SMART ultradead3 136 329 IPR014001 -
Lele08g0988 738 PANTHER OS08G0560600 PROTEIN 548 738 - -
Lele08g0988 738 MobiDBLite consensus disorder prediction 546 567 - -
Lele08g0988 738 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 116 145 IPR014014 GO:0003724
Lele08g0988 738 Pfam DEAD/DEAH box helicase 142 301 IPR011545 GO:0003676|GO:0005524
Lele08g0988 738 MobiDBLite consensus disorder prediction 40 55 - -
Lele08g0988 738 MobiDBLite consensus disorder prediction 546 568 - -
Lele08g0988 738 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 105 308 IPR027417 -
Lele08g0988 738 Pfam DnaJ homologue, subfamily C, member 28, conserved domain 610 673 IPR018961 -
Lele08g0988 738 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 249 419 IPR027417 -
Lele08g0988 738 MobiDBLite consensus disorder prediction 1 90 - -
Lele08g0988 738 Gene3D - 101 319 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0988 Lele-ChrLele08 6270775 6278740 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g0988 101 416 Eukaryotic Initiation Factors Gene Family AT3G19760 31.429 5.21e-36 139