Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0987 ATGCAGAGTTTTCTTTTGATGTTACTGGCCTTCGCCACCGTTTTGGTGCCGGTATCGGTAGTTCACGGTGGGTTGTACCCTCTGGAACGGGCAATTCCTCTCAGTCGGCAAGTCGAGCTGGAAGCACTCAGAGCTCGCGACCGAGCTCGGCACGCTCGAATCTTGCAGGGTGTAGCAGGTGGTGTTGTCGAATTCTCAGTCAAAGGGCTATCTGATCCTTCTACTATTGGGTTGTATTATACAAAAGTGAAACTGGGCTCTCCTCCAAGAGAATTCAACGTCCAGATTGATACCGGAAGCGACGTATTGTGGATTAATTGCAATACTTGCGGTAATTGCCCTCAATCTAGTGAATTGGAGATTCAGCTCAGCTTCTTTGATACAGCCAGCTCATCCACATCTGCGCTGATTTCCTGCTCAGACCCAATATGCACTTCTTCAACTCAAAGTGCCGCAACTGAATGCACCCCTCAGATTAATCAGTGCAGCTACACCTTTCAGTATGGAGATGGAAGTGGGACATCAGGGTATTATGTTTCTGATGCAATGCATTTTGACATGATCCTTGGGCAGTCTATGCTGGCTAATTCTTCAGCTAAAGTTGTTTTTGGGTGTAGTACCTATCAGTCTGGAGATTTGACTAAGTCAGATAAAGCAGTGGATGGAATTTTTGGGTTTGGCCCTGGTGCTCTATCCGTTATTTCACAATTATCATCACGAGGCATGACCCCCAAAGTATTTTCTCATTGTTTAAAAGGAGATGGTAATGGAGGAGGCATACTAGTTCTTGGTGAGATTTTGGAGCCAAGTCTTGTTTATAGTCCACTTGTCCCGTCACAGCCTCATTACAACTTAAATCTTCAGAGCATTGGTGTTAATGGACGAATTCTCCCTATTAATCCAGCAGTTTTTGCAACATCTAACAACCGAGGAACTATTGTTGATACGGGTACAACCTTGTCATACCTTGTTCAAGAAGCATATGATCCATTGGTCAATGCTATAACTACCATTGTTTCACAGTCTGCCACTCCCGTCATTTCAAAAGGAAGCCAGTGTTATTTGGCCTCAGCCAGTGTAGGTGATATATTTCCTTCAGTCAGTTTGATCTTTGCTGGTGGAGCATCCATGGTTTTAGAACCAGAACAGTACCTCTTACATTCTGATTTCATTGATGGAGTTCCAGAGTGGTGTATTGGTTTCCAGAAAGTGCAGGAGGGAGTTTCAATTTTAGGAGATCTTGTCCTAAAAGATAAGATATTTGTCTACGACTTAGCTCATCAACGAATTGGATGGGCTAACTATGATTGTTCTCTGTCTGTGAATGTCTCTGTGACCACAACCAAGGACGAGTATGTTAGCGCGGGACAGCTGAGTGTGAGCAGTTCAGAGTCAGATATTCTCGCCAAGGTGCTGCCTTTAAGCGTTGCAGCTTTCTTTATGCACATAGCAGTTTTCTAG 1461 0.4428 MQSFLLMLLAFATVLVPVSVVHGGLYPLERAIPLSRQVELEALRARDRARHARILQGVAGGVVEFSVKGLSDPSTIGLYYTKVKLGSPPREFNVQIDTGSDVLWINCNTCGNCPQSSELEIQLSFFDTASSSTSALISCSDPICTSSTQSAATECTPQINQCSYTFQYGDGSGTSGYYVSDAMHFDMILGQSMLANSSAKVVFGCSTYQSGDLTKSDKAVDGIFGFGPGALSVISQLSSRGMTPKVFSHCLKGDGNGGGILVLGEILEPSLVYSPLVPSQPHYNLNLQSIGVNGRILPINPAVFATSNNRGTIVDTGTTLSYLVQEAYDPLVNAITTIVSQSATPVISKGSQCYLASASVGDIFPSVSLIFAGGASMVLEPEQYLLHSDFIDGVPEWCIGFQKVQEGVSILGDLVLKDKIFVYDLAHQRIGWANYDCSLSVNVSVTTTKDEYVSAGQLSVSSSESDILAKVLPLSVAAFFMHIAVF 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0987 486 ProSiteProfiles Peptidase family A1 domain profile. 79 433 IPR033121 -
Lele08g0987 486 PRINTS Pepsin (A1) aspartic protease family signature 312 323 IPR001461 GO:0004190|GO:0006508
Lele08g0987 486 PRINTS Pepsin (A1) aspartic protease family signature 85 105 IPR001461 GO:0004190|GO:0006508
Lele08g0987 486 PRINTS Pepsin (A1) aspartic protease family signature 409 424 IPR001461 GO:0004190|GO:0006508
Lele08g0987 486 FunFam Aspartic proteinase-like protein 2 62 265 - -
Lele08g0987 486 Pfam Xylanase inhibitor C-terminal 282 433 IPR032799 -
Lele08g0987 486 Pfam Xylanase inhibitor N-terminal 79 264 IPR032861 -
Lele08g0987 486 Gene3D Acid Proteases 64 265 IPR021109 -
Lele08g0987 486 PANTHER ASPARTYL PROTEASES 7 431 IPR001461 GO:0004190|GO:0006508
Lele08g0987 486 CDD pepsin_A_like_plant 79 437 IPR034161 -
Lele08g0987 486 FunFam Aspartic proteinase-like protein 2 266 444 - -
Lele08g0987 486 Gene3D Acid Proteases 266 444 IPR021109 -
Lele08g0987 486 SUPERFAMILY Acid proteases 77 440 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0987 Lele-ChrLele08 6263255 6267838 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g0987 76 438 Miscellaneous Gene Families AT1G44130 27.225 2.74e-42 153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele08g0987 08 6263255 6267838 Lele13g1713 13 25655055 25659144 CCT
Lele08g0987 08 6263255 6267838 Lele14g1656 14 24060404 24061157 CCT
Lele08g0987 08 6263255 6267838 Lele15g0703 15 4046444 4063908 CCT
Lele08g0987 08 6263255 6267838 Lele16g0706 16 3978064 3982239 CCT
Lele08g0987 08 6263255 6267838 Lele08g0987 08 6263255 6267838 ECH
Lele05g1137 05 7100955 7105378 Lele08g0987 08 6263255 6267838 hybridization
Lele06g1000 06 6203040 6207861 Lele08g0987 08 6263255 6267838 hybridization