Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0986 ATGGCGAATACTACGTCGGTCGCCTCCACCGCTGCTTCGCTTTACGTCGGCGATCTCCACCCTGACGTCACCGATGGTAAGCTGTTTGAAATATTCTCCCAGTTCAAGAGCCTCACTTCTGTTCGGGTCTGTAGGGACTCCTCTACCGGCAGGTCGCTATGTTACGGCTACGTCAACTTCGTCTCTCCTCAAGATGCTATTCGTGCTATTGAGGTGAAGAATCATTCTATACTGAATGGAAAAGCGATAAGGATCATGTGGTCAAATCGTGATCCTGATGCAACTAAAAGTGGCATAGGGAATGTATTTGTTAAGAAAGTGTTTCTCGTACCATGGCAGAATCTACGTGAAACAATAGATAACGTGGGATTACAAGATTTGTTTCAAAAGTTTGGTATCATTTTGTCCTGCAAAGTTGTCATGTCTGACGATGGAAAAAGCAAAGGATATGGCTATGTTCAATTTCAGTCAGAGGAATCTGCAAATTCTGCCATCGAGAAGCTGAATGGCTCTACTGTTAACGACAAGCAAATCTATGTTGGAAAGTTTGTCAAAAAAAGTGACCGCATTTTGCCAAATCCTGATGCGAAATATACAAATTTGTATTTCAAGAATTTGGACCCCAAAATTACTGAAGAGCTTCTACAGGAAAAGTTCTCATCTTTTGGGAAAATTGTTAGCTTAGTTATTGCGAAGGATGACAATGGGATTTCAAAGGGTTTTGGCTTCGTGAACTACGATAACCCAGATGATGCTAGACGGGCAATGGAAGGAATGAATGGATCACAACTTGGCAGTTCAAAGATTCTATATGTAGCCAGAGCACAAAAGAAGGCCGAGCGTGAGCTTATTTTGCACCATCAGTTTGAGGAGAAACGCAAGGAACAAATCTTAAAATACAAGGTATCAAATGTTTATGTGAAAAACATTGATGACGACGTAAGTGATGAAGAACTACGGAATCTTTTTCGTGCATGTGGCTCAATAACATCTGCAGTAGTTATGCGAGATGGCAAAGGTATAAGCAAAGGGTTTGGTTTTGTCTGCTTCTCCACCGCTGAGGAGGCTAATAAAGCTGTGAACACCTTTCATGGAAACATGTTTCATCGCAAACCATTATATGTTGCTATTGCTCAAAGGAAGGAGGATAGGCAAGCACAATTGCAGATTCAGCATGCACAGCGAATGGCAGGACTATCTGGACCTTCAATAGCTGTTATTCCTGGCGGATATTCTCCTTATTATTATTCAGCTACCGGAGCCGTTTCACAGGTTCCTTCTCGACCTGGGCTAATGTGTCAACCTTTGGGGTTGACACAAGGATGGAGGGCTAACAGCTTTGCACCTCCTGCCAGACCATTTCAACAGCCACTAGTTCCTATGGTTCCCAATTCTACGAGGCAAAATAGGCAAAACAGGGGCAGGATGAATGGGCAAACAATTTCACAAGGAAATCTTCACTCTGCTCCAAATATGCCACAATTGCGTCAGCCTTTTCAGTCAGTGAACTCTTCAAAAGAATTAAGTACACAACAGCGAGCTGGGACGACAAAGTACGTGCCCAGTGGGTGCCAGCCTGAAATGGAGAAAGTATCTGGAGTCTCCTCTGGTGGTAGCTCTTCTGTAGGATCTTCGGGATCAGAAATGCTGCATAGCATGCTTGCTGCTGCTACTCTAGAGCAGCAGAAACAGATACTCGGCGAGCATCTGTACCCTCTAATCCATAAACTCAAGCCTGGCCTAGCAGCGAAGATTACAGGGATGCTTTTAGAGATGGACAATGGAGAATTGCTGCTTCTCCTGGAGTCTTCAGAGTCTCTTACTGCCAAGGTGGAAGAAGCCGTGCAGGTGCTCAAGAACTCCAAGACCAAAGTTTCTGGTCAGGATGTACTTCATCCTAATTTCCTTTCAGCTGAAGTTGCGGTGAACTAA 1932 0.4405 MANTTSVASTAASLYVGDLHPDVTDGKLFEIFSQFKSLTSVRVCRDSSTGRSLCYGYVNFVSPQDAIRAIEVKNHSILNGKAIRIMWSNRDPDATKSGIGNVFVKKVFLVPWQNLRETIDNVGLQDLFQKFGIILSCKVVMSDDGKSKGYGYVQFQSEESANSAIEKLNGSTVNDKQIYVGKFVKKSDRILPNPDAKYTNLYFKNLDPKITEELLQEKFSSFGKIVSLVIAKDDNGISKGFGFVNYDNPDDARRAMEGMNGSQLGSSKILYVARAQKKAERELILHHQFEEKRKEQILKYKVSNVYVKNIDDDVSDEELRNLFRACGSITSAVVMRDGKGISKGFGFVCFSTAEEANKAVNTFHGNMFHRKPLYVAIAQRKEDRQAQLQIQHAQRMAGLSGPSIAVIPGGYSPYYYSATGAVSQVPSRPGLMCQPLGLTQGWRANSFAPPARPFQQPLVPMVPNSTRQNRQNRGRMNGQTISQGNLHSAPNMPQLRQPFQSVNSSKELSTQQRAGTTKYVPSGCQPEMEKVSGVSSGGSSSVGSSGSEMLHSMLAAATLEQQKQILGEHLYPLIHKLKPGLAAKITGMLLEMDNGELLLLLESSESLTAKVEEAVQVLKNSKTKVSGQDVLHPNFLSAEVAVN 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0986 643 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 90 IPR000504 GO:0003723
Lele08g0986 643 SMART poly_2 558 621 IPR002004 GO:0003723
Lele08g0986 643 CDD RRM1_I_PABPs 13 92 - -
Lele08g0986 643 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 303 380 IPR000504 GO:0003723
Lele08g0986 643 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 546 623 IPR002004 GO:0003723
Lele08g0986 643 Gene3D - 544 633 - -
Lele08g0986 643 Gene3D - 2 98 IPR012677 -
Lele08g0986 643 Gene3D - 285 394 IPR012677 -
Lele08g0986 643 Gene3D - 190 284 IPR012677 -
Lele08g0986 643 Gene3D - 113 189 IPR012677 -
Lele08g0986 643 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 12 619 IPR006515 GO:0003723
Lele08g0986 643 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 185 IPR000504 GO:0003723
Lele08g0986 643 MobiDBLite consensus disorder prediction 459 475 - -
Lele08g0986 643 PANTHER RNA BINDING PROTEIN 299 522 - -
Lele08g0986 643 FunFam Polyadenylate-binding protein 4 95 - -
Lele08g0986 643 Pfam Poly-adenylate binding protein, unique domain 553 618 IPR002004 GO:0003723
Lele08g0986 643 SMART rrm2_1 304 376 IPR003954 GO:0003676
Lele08g0986 643 SMART rrm2_1 107 181 IPR003954 GO:0003676
Lele08g0986 643 SMART rrm2_1 200 272 IPR003954 GO:0003676
Lele08g0986 643 MobiDBLite consensus disorder prediction 454 475 - -
Lele08g0986 643 FunFam Polyadenylate-binding protein 190 285 - -
Lele08g0986 643 SUPERFAMILY RNA-binding domain, RBD 13 187 IPR035979 GO:0003676
Lele08g0986 643 FunFam Poly(A) binding protein cytoplasmic 1 like 96 189 - -
Lele08g0986 643 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 178 IPR000504 GO:0003723
Lele08g0986 643 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 201 269 IPR000504 GO:0003723
Lele08g0986 643 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 84 IPR000504 GO:0003723
Lele08g0986 643 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 305 373 IPR000504 GO:0003723
Lele08g0986 643 CDD RRM2_I_PABPs 98 182 IPR045305 -
Lele08g0986 643 SUPERFAMILY RNA-binding domain, RBD 300 400 IPR035979 GO:0003676
Lele08g0986 643 FunFam Polyadenylate-binding protein 544 630 - -
Lele08g0986 643 CDD RRM4_I_PABPs 303 380 - -
Lele08g0986 643 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 199 277 IPR000504 GO:0003723
Lele08g0986 643 SUPERFAMILY PABC (PABP) domain 471 629 IPR036053 GO:0003723
Lele08g0986 643 FunFam Polyadenylate-binding protein 286 394 - -
Lele08g0986 643 SUPERFAMILY RNA-binding domain, RBD 191 281 IPR035979 GO:0003676
Lele08g0986 643 MobiDBLite consensus disorder prediction 506 545 - -
Lele08g0986 643 SMART rrm1_1 304 376 IPR000504 GO:0003723
Lele08g0986 643 SMART rrm1_1 200 273 IPR000504 GO:0003723
Lele08g0986 643 SMART rrm1_1 13 86 IPR000504 GO:0003723
Lele08g0986 643 SMART rrm1_1 101 181 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0986 Lele-ChrLele08 6256681 6261159 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g0986 12 641 Eukaryotic Initiation Factors Gene Family AT2G36660 51.577 0.0 603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g1702 13 25604335 25607278 Lele08g0986 08 6256681 6261159 CCT
Lele14g1644 14 24003211 24006751 Lele08g0986 08 6256681 6261159 CCT
Lele15g0711 15 4101334 4111153 Lele08g0986 08 6256681 6261159 CCT
Lele16g0717 16 4043677 4046406 Lele08g0986 08 6256681 6261159 CCT
Lele08g0986 08 6256681 6261159 Lele08g0986 08 6256681 6261159 ECH
Lele05g1136 05 7091145 7094812 Lele08g0986 08 6256681 6261159 hybridization
Lele06g0999 06 6196303 6200740 Lele08g0986 08 6256681 6261159 hybridization