Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0977 ATGCATCATTCTCAAATGGTTTCTTACGCTTCTTCGCACCATGAAACTGATATTCCTCAAGCACCGACACAGCAATCGATCAAGCATGGGTACCCCTCTTATTCTGCGAAGATCAATCAACAAATGGCTCTCAGTGACGATGATGAAGGCTGTTTCGGAGCAGAGGGCAACGTCAGCTCCGGTGATATGAGGAAAGTGTCCCAGTGGCACAGAATGAAGTGGACGGACACTATGGTTAGGCTCTTGATAATGGCGGTTTATTACATTGGCGATAATGAATGTGGTTCAGAAGGGGCTGATAAGAAGAAACCTGCGGGTCTGTTACAGAAGAAAGGCAAGTGGAAATCGGTTTCCAGGGCTATGATGGAGAAGGGTTTTTTCGTGTCTCCTCAACAATGCGAGGACAAGTTTAATGATTTGAATAAGAGGTACAAGAGAGTGAATGATATTCTGGGTAAAGGAACAGCTTGTCTGGTGGTGGAAAATCACAGCTTGTTGGAGACTATGGGCTTGTCACCAAAAAGGAAAGAGGAAGTTCGAAAATTGCTCAATTCTAAGCACCTTTTCTTCAGGGAAATGTGTGCTTACCACAATAGTTGTGGCCATGGCGGCGGCGCCACCTGTGGGCCGCCGGAACAACAATCCCCGGAGGAGGGAACAGAGCCATCTCAAGCGCCTCCTCAACCACAGCAACAGCACCAACAGTGTTCGCACTCATCGGAAGTTGGGATGGCTAATTTGAGAAAGCCAGAATCAGAAGGACTCAAGATTTTGAAAGAGGTAAGCAGGGAAGAGGATGAAGACGGCGACGAAGAAGATGGGTCAGAGGATTCTTCTGATGAGGACGAAGAAGAGTCAGGAGAAGGCGTTTCAAGGGGTCGTAAAACTGGGAGCGCACATGAATTAGACGAGGATGAGAATTATGAAGGAAGAGCATCAACGAAGAGATCAAGAAAAGAACAAATCTGTTGGTCGTCGTCGAAGCTAATGCAGGAAACGAGCAACGAAGTGATGGGTGTGTTACAAGACGGAGGGAGAAGCGCGTGGGAGAAGAGGAAGGTAATGCAGTTGGAGGAACAGCGACTGAGGTACGAGGTAGAAGCATTTGAGCTGGAGAAGCAGAGGCTGAAATGGGCGAGATTTAGCAGCAAGAAAGAGAGGGACATGGAAAGAGCAAAGCTTGAGAATCAAAGGAGGCAGCTGGAGAATGAGAAGATGGTTTTGCTATTACGGTGGAAGGATCTTGAGCTGTTGAGTCAATCTTCACCATCACCGACGACGGCGACAACAGCAGCAGCAACATTCTTCTAA 1311 0.476 MHHSQMVSYASSHHETDIPQAPTQQSIKHGYPSYSAKINQQMALSDDDEGCFGAEGNVSSGDMRKVSQWHRMKWTDTMVRLLIMAVYYIGDNECGSEGADKKKPAGLLQKKGKWKSVSRAMMEKGFFVSPQQCEDKFNDLNKRYKRVNDILGKGTACLVVENHSLLETMGLSPKRKEEVRKLLNSKHLFFREMCAYHNSCGHGGGATCGPPEQQSPEEGTEPSQAPPQPQQQHQQCSHSSEVGMANLRKPESEGLKILKEVSREEDEDGDEEDGSEDSSDEDEEESGEGVSRGRKTGSAHELDEDENYEGRASTKRSRKEQICWSSSKLMQETSNEVMGVLQDGGRSAWEKRKVMQLEEQRLRYEVEAFELEKQRLKWARFSSKKERDMERAKLENQRRQLENEKMVLLLRWKDLELLSQSSPSPTTATTAAATFF 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0977 436 Pfam Myb/SANT-like DNA-binding domain 71 195 IPR044822 -
Lele08g0977 436 Coils Coil 354 374 - -
Lele08g0977 436 MobiDBLite consensus disorder prediction 264 286 - -
Lele08g0977 436 MobiDBLite consensus disorder prediction 287 321 - -
Lele08g0977 436 MobiDBLite consensus disorder prediction 213 242 - -
Lele08g0977 436 MobiDBLite consensus disorder prediction 1 27 - -
Lele08g0977 436 Coils Coil 384 411 - -
Lele08g0977 436 Gene3D - 74 146 - -
Lele08g0977 436 MobiDBLite consensus disorder prediction 206 321 - -
Lele08g0977 436 PANTHER F16F4.11 PROTEIN-RELATED 5 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0977 Lele-ChrLele08 6202803 6204113 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Lele08g0977 Myb_DNA-bind_4 4e-21 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele08g0977 08 6202803 6204113 Lele13g1700 13 25593394 25598942 CCT
Lele08g0977 08 6202803 6204113 Lele14g1642 14 23989706 23995384 CCT
Lele08g0977 08 6202803 6204113 Lele15g0713 15 4116922 4122457 CCT
Lele08g0977 08 6202803 6204113 Lele16g0720 16 4054315 4059996 CCT
Lele08g0977 08 6202803 6204113 Lele08g0977 08 6202803 6204113 ECH
Lele05g1126 05 7032381 7033835 Lele08g0977 08 6202803 6204113 hybridization
Lele06g0989 06 6143269 6144570 Lele08g0977 08 6202803 6204113 hybridization