Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0960 ATGCTATTATTACTGTTACCGTCCCAAACTTATAAAAACCTGGGCAAATCGTTTACGCTGCCGACCAGGGCTTATCATTCTTTTATCGTTTTTGCTTCCTGTGAACCAGTACACTGTTTGGTCCCCGCGATCAACATGAATCCGAACGACGAAGGAAAACCAAATTCTCCGAAGAGGTCGAAGGTTAAAGCTCCGGCTGATACGTATTGTTCGAGTCATTTGGAGCAGGAAACATATGGATTCTCTCCCATGGAGTTGAGTTCTGCAGCATTCGGAGATGCCTCAGCGAGTCTTTCAATGGCGGACATTGGCCTTTCTGGCTATCCTCCTTCGTCTCTGTGTGATTCTTCAATGGAGTTTAGAGCATTCTCAACCATGAGCCCGACATCTCTGGCTTCGCCTCCTCCTCCTGCTCTTGTTAGTGATGAGAGAGCTCCTTTGTTACCAGCAACTATTAAGGAGAAGGCCGGGTTAATAGAAATAAGCGGTGAGTTGGAGGACGTTGATGTGCCACAGCCGCTTGATTGTTTACAGGAGAATCCGATTCCGCCATTTCTTTGGAAAACTTACGATCTGGTGGATGATCCATCTCTGGATCCTATCATATCATGGGGCTCGGCCGGTGCTAGTTTCGTGGTATGGGACGCTGTGGAATTTGCAAGGATCGTCTTGCCAAGGAATTTCAAGCATAACAATTTCTCCAGTTTTATCCGCCAGCTAAATACTTATGGGTTCCGCAAGATTGACCCTGATAAGTGGGAGTTTGCGAATGAAGGTTTCAGGCGAGGGAAGAGACATCTATTGAAGAACATACAAAGGCGCAGATCACTGCAATCCCAGCATGCTGGTAATGTTGTGCCATCCACTAAAGCAGGAAAGTCTGGAGTTGAGGTCGAGATAGAAAGACTGAGAAAGGAGAGAAGTATATTAGTCCAAGATTTGGTTGATTTGCAGCAACAACAGAGAAGGACAGTTCATCAAGCGGGACAAGTGAACCAGAAGCTTGAGTCTGCAGAGCAGAGACAGAAACAAATGGTTTCTTTCTTGGCAAAGTTATTTCAAAATCCAGCATTTTTAGCCCGCCTGAGGCAACGGAAGGAACCCACAGGTATAGATTCTCCAAGAGTGAGAAGGAAGTTTGTCAAGCAGCACCAACACGAAACAGGAACATCAGACTCTTTGAATGAAGGGCAGATTGTAAAATACCAACCTGATTGGAGAGACATTACCATCCCTTCAGAAACAGCAGTACTAAATCCAATTTCTACTAAACAGTCTCCTGAGCACCCTTCACAGGATTGGGCAAGAGAACTTGGTTCAGTAGCAGAAAATCTGTATGTGCAAGCTGATGTTACTGTATCAGATGAATTGGCTGCAGCTAGTGAAATAACGACTACTCCAGAGATCATGGGAGAAGGATCGTCAAGCTTAGGGCTTGAAGATCCTCTTTGGAAAGGGAAAAACGTCATGAGACCAGATCAAGAAGTTATCCCAGAGAATATGACCAGGGAGAACAGTGTTTCAATGTTTTACCCGCCTGAAACTGAAAGCGTTATTAAACAAGATGTATGGAACCCGGGCTTTAATGTTAGCTGTGCTACTTATAGCTCTGTGGATGAGCTGTGGGACAATCCAATTCCAATCAATTATGGAGTGCCAGAATTTGGAGTGACAGGTGGCATGTCAGACCTCTGGGATATAAGCTATATGCAAGAAACAGGAAATTCAGGTCTCGATGACGATAACTGGCCAACTGATGAGTTCACTCCAAATGAAACAGAAGGTCAGGCTGACCGCCCAAAAGATGTTTAG 1812 0.4503 MLLLLLPSQTYKNLGKSFTLPTRAYHSFIVFASCEPVHCLVPAINMNPNDEGKPNSPKRSKVKAPADTYCSSHLEQETYGFSPMELSSAAFGDASASLSMADIGLSGYPPSSLCDSSMEFRAFSTMSPTSLASPPPPALVSDERAPLLPATIKEKAGLIEISGELEDVDVPQPLDCLQENPIPPFLWKTYDLVDDPSLDPIISWGSAGASFVVWDAVEFARIVLPRNFKHNNFSSFIRQLNTYGFRKIDPDKWEFANEGFRRGKRHLLKNIQRRRSLQSQHAGNVVPSTKAGKSGVEVEIERLRKERSILVQDLVDLQQQQRRTVHQAGQVNQKLESAEQRQKQMVSFLAKLFQNPAFLARLRQRKEPTGIDSPRVRRKFVKQHQHETGTSDSLNEGQIVKYQPDWRDITIPSETAVLNPISTKQSPEHPSQDWARELGSVAENLYVQADVTVSDELAAASEITTTPEIMGEGSSSLGLEDPLWKGKNVMRPDQEVIPENMTRENSVSMFYPPETESVIKQDVWNPGFNVSCATYSSVDELWDNPIPINYGVPEFGVTGGMSDLWDISYMQETGNSGLDDDNWPTDEFTPNETEGQADRPKDV 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0960 603 Gene3D - 177 275 IPR036388 -
Lele08g0960 603 SMART hsfneu3 181 274 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele08g0960 603 PRINTS Heat shock factor (HSF) domain signature 236 248 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele08g0960 603 PRINTS Heat shock factor (HSF) domain signature 185 208 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele08g0960 603 PRINTS Heat shock factor (HSF) domain signature 223 235 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele08g0960 603 SUPERFAMILY "Winged helix" DNA-binding domain 181 274 IPR036390 -
Lele08g0960 603 Coils Coil 300 320 - -
Lele08g0960 603 FunFam Heat shock transcription factor 1 178 275 - -
Lele08g0960 603 Pfam HSF-type DNA-binding 185 274 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele08g0960 603 ProSitePatterns HSF-type DNA-binding domain signature. 224 248 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele08g0960 603 MobiDBLite consensus disorder prediction 572 603 - -
Lele08g0960 603 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 171 410 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0960 Lele-ChrLele08 6064950 6067648 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g0960 126 587 HSF AT5G03720 43.125 4.91e-102 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lele08g0960 HSF_DNA-bind 2.2e-30 CL0123