Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0958 ATGGATAGCTCGCGTAGACCGTTTGATAGATCGAGAGAGCCTGGTACCAAGAAACCCCGACTGACCGACGAGCTCGAGCGTGGCTCAAATTCCAGTCTTCGATCTTTTCCTCAGCGACAAGTGGCTTCTGGAGTCAATTCATTGGCCCCTTCAACGTTCAGGACAAATGACAGAGATTCCCAAGGCAGTGACCCTGGTCGCGGTGGATACCAGCCCCAACCGCTCCACCAAGAGCTTGTCAATCAGTACAAAACCGCACTTGCTGAGCTGACATTCAATTCTAAACCGATAATTACCAACTTGACCATAATTGCAGGCGAGAATCTTTATGCCGCGAAGGCAATTGCTGCCGCTGTTTGTGCTAACATTCTAGAGGTTCCCACTGAACAAAAGCTGCCATCTCTTTATCTTTTAGACAGTATTGTTAAGAATATTGGGCGGGACTATATAAAATACTTTGCTGCTAGACTACCTGAGGTATTCTGCAAGGCATACAGACAGGTTGATTCTTCTGTCCATTCAAGTATGAGGCACCTTTTTGGAACTTGGAAAGGAGTCTTTCCTCCTCAGACTCTCCAGATGATTGAGAAGGAACTTGGCTTCACTCCTGCTGTCAATGGTTCATCTTCTGCATCTACACTGAGGAGTGATTCACAATCACAACGACCACAGCATGGTATCCATGTGAATCCTAAATATTTGGAGAGGCAGCGTCTTCAGCAATCTGGCAGGATTAAAGGAACAGCTAATGATATTACTGAAACTACTGCAAACTCTAGTGATGGCTCAGAAAGGCCAGATAGAGCATTAGGTGCTGCACGACCATGGGTGGAGTCAAGTGCTAACATGCATAACATTCAGGGCTCTAATAGAGATTCATATAATGATTCTGTTCCTGAAAAGGGCATTGGGACATCCTATGGAGGCAATGAATATGGTTCTGATCTTTCAAGGAATTCAGGTTTGGGTATTGGAAGAGCTGGTGGCAGGACCTCCGAGTTGGCCCGTGATAAAGCTTGGTACAAAGCAGGCAGCAATGCTGCAGACATGATGTCTGTCCAAAGGAATGGTTTCAGTCTCAAGCGTAGCTTACCAAATCATGAAGCACCAAAGTCCATCAACTTGGATGAACATAATCAGCCAACACAAAGCTTAACTAGCATAAAGAGTAGTGTCTTGTCAAGTAGCTGGAAAAATTCTGAGGAAGAGGAGTACATGTGGGATGAGGTGAATGCTGGACTAACTGAGCATGGTGCATCCAATGCCTCTAACAACTTGAGCAAAGATTGTTGGACTGCTGATGATGACCGTTTGGCAGTTGAAGGTCACCTTCAAAGCACGTTCCATGAAGATAGGGATGTATCCACTGAAATGAAACGCCCACCTGCTTTTGGCCATCGGCCATCCTTATCTTGGAAATCACAGCAGCAGCAGCAGTCATTTGATGAGCTGAATCATAGGTCATGTCCTTCAGAAGGCATTGGATCCACTCTTGGTAGGTTGCCAAACGTTGTGAATTCTTCTAATTTCCAAATGGGAAATCGGCCTTTCTTGTCAAATGCCACATTAGGATCGGTAGGAAGGGTGCAACAACAGCAATTTCATTCTGTGGGAGCAGACTCTCCATCTTGGCAGTCGCCTTTGCGACAACAGTCTCCATCACCACCAGTTAATGTGCACCATCCTGATCAAATGCGGATTTTGGCTGAGCAAGACCATCAACAGACTCTTAAAATGTCTCAATTTTCTGGACGTCTACAGAGCCAAGATATTCAAGATTCATCATCTGTCCTTCCACATACTGTTCAGGTTGGTAACTCAGAGAGTTCACATCAAAAGGACTTGCAAGGCCCATTGTCTTCAGTATCTACTTTTCAGCCAAGTCGACATAATGCAGCTTCGCAACCGCAGCATCTTGGTTCTAATACTGAAGTGTCTGAGATGAAGGAAAAGATGACCCTCCCTAAAGAAACATCAGAGCAGTCAACTACAAGTACTATGTTAGCTGCAGTTATGAAGAGTGGAATTTTCACCAGCGGTCAGCCTGGTACAAGTTTCTCGGATAGAAGGAACCTGCCATCGAAATCAGGGGTTCAGCCTACCCGACCAAGTGGATCATCTCCGACAACATCAGTTTCTTCAGGGTCTGGGGTTGCATCTCCATCTCGATTAGGTCCTTCTAATGATGACTCATCTATTCTGCCAAAAGAATCTCAAGGAAAGGTTGGAGCCCCGTCAAGGCTACCTGCTCCACCACCAGCTTTCTCTACTGCGAGTAGTGCCTCAGCCAAGACGTCAAATGCCACCAACAATAAATCTAATCCAGTTTCAAACCTTTTAAACTCATTAGTTGCAAAGGGTTTGATTTCTGCAAAAATAGATTCATCTACTGAGGTGCCAGCTGAGGTGCTGACTCGATTGGAAGATCAGAGCAAAAGCATCACCACCAGTAGCGCTTTGCCAGCTGTTTCAGTTACTGGTTCTGCAACTGTTCCTGTTTTATCTACCGGAGATGATCAGCCTGCAAAAGGTTCCTCCGGCACCCCCACAGAAATAAAAAGTCTAATTGGCTTTGAGTTTAAGCCCAGTGTGATCCGAGAATTGCATATACCTGTGATCAGAGAACTATTGGATAATTTCCCTCATCATTGCAGTATCTGTGGCCTTAGGCTTAAACATCAAGAACAATTTAATAGACACTTGGAGTGGCATGCTATGATAGGAAGAGAACAAAATGATATATTGAAGGCCTCAAGGAGATGGTATTTAAGGTCAAGGGACTGGGTTGTTGGCAAGGATGAAGTTTCATCTGAGCGTGAGGGTATTGATTCCGTAGATTTATATGGCAATGAATCAGACAGAAGTGAAGAGGATGCTAAGGTTCCATCTGATGAAGATCAGTGCTTATGTATGCGGTGTGGTGAGCTGTTTGAAGATGTTTATTGTCAAGAAAGGGATGAGTGGATGTTCAAAGGGGCAGTTTACCTACCTGTCTCTGGTAGTGATAGTGAGATGTATATTAACGTTGGTAGTAAAAGGGGCCCCATTGTTCACACTTGGTGCTTATCAGAGAGCTCCATGTCTAGCTCCCCTAGAAAGGAACAGGAACAGGATTAG 3117 0.4495 MDSSRRPFDRSREPGTKKPRLTDELERGSNSSLRSFPQRQVASGVNSLAPSTFRTNDRDSQGSDPGRGGYQPQPLHQELVNQYKTALAELTFNSKPIITNLTIIAGENLYAAKAIAAAVCANILEVPTEQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFCKAYRQVDSSVHSSMRHLFGTWKGVFPPQTLQMIEKELGFTPAVNGSSSASTLRSDSQSQRPQHGIHVNPKYLERQRLQQSGRIKGTANDITETTANSSDGSERPDRALGAARPWVESSANMHNIQGSNRDSYNDSVPEKGIGTSYGGNEYGSDLSRNSGLGIGRAGGRTSELARDKAWYKAGSNAADMMSVQRNGFSLKRSLPNHEAPKSINLDEHNQPTQSLTSIKSSVLSSSWKNSEEEEYMWDEVNAGLTEHGASNASNNLSKDCWTADDDRLAVEGHLQSTFHEDRDVSTEMKRPPAFGHRPSLSWKSQQQQQSFDELNHRSCPSEGIGSTLGRLPNVVNSSNFQMGNRPFLSNATLGSVGRVQQQQFHSVGADSPSWQSPLRQQSPSPPVNVHHPDQMRILAEQDHQQTLKMSQFSGRLQSQDIQDSSSVLPHTVQVGNSESSHQKDLQGPLSSVSTFQPSRHNAASQPQHLGSNTEVSEMKEKMTLPKETSEQSTTSTMLAAVMKSGIFTSGQPGTSFSDRRNLPSKSGVQPTRPSGSSPTTSVSSGSGVASPSRLGPSNDDSSILPKESQGKVGAPSRLPAPPPAFSTASSASAKTSNATNNKSNPVSNLLNSLVAKGLISAKIDSSTEVPAEVLTRLEDQSKSITTSSALPAVSVTGSATVPVLSTGDDQPAKGSSGTPTEIKSLIGFEFKPSVIRELHIPVIRELLDNFPHHCSICGLRLKHQEQFNRHLEWHAMIGREQNDILKASRRWYLRSRDWVVGKDEVSSEREGIDSVDLYGNESDRSEEDAKVPSDEDQCLCMRCGELFEDVYCQERDEWMFKGAVYLPVSGSDSEMYINVGSKRGPIVHTWCLSESSMSSSPRKEQEQD 1038
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0958 1038 ProSitePatterns Zinc finger C2H2 type domain signature. 884 904 IPR013087 -
Lele08g0958 1038 MobiDBLite consensus disorder prediction 941 960 - -
Lele08g0958 1038 MobiDBLite consensus disorder prediction 362 393 - -
Lele08g0958 1038 MobiDBLite consensus disorder prediction 206 226 - -
Lele08g0958 1038 FunFam polyadenylation and cleavage factor homolog 4 72 200 - -
Lele08g0958 1038 MobiDBLite consensus disorder prediction 1 74 - -
Lele08g0958 1038 MobiDBLite consensus disorder prediction 449 478 - -
Lele08g0958 1038 MobiDBLite consensus disorder prediction 531 561 - -
Lele08g0958 1038 MobiDBLite consensus disorder prediction 206 298 - -
Lele08g0958 1038 MobiDBLite consensus disorder prediction 375 393 - -
Lele08g0958 1038 MobiDBLite consensus disorder prediction 679 777 - -
Lele08g0958 1038 SUPERFAMILY ENTH/VHS domain 76 204 IPR008942 -
Lele08g0958 1038 MobiDBLite consensus disorder prediction 28 59 - -
Lele08g0958 1038 Pfam CID domain 84 194 IPR006569 -
Lele08g0958 1038 MobiDBLite consensus disorder prediction 531 558 - -
Lele08g0958 1038 MobiDBLite consensus disorder prediction 235 263 - -
Lele08g0958 1038 MobiDBLite consensus disorder prediction 1 27 - -
Lele08g0958 1038 MobiDBLite consensus disorder prediction 753 777 - -
Lele08g0958 1038 MobiDBLite consensus disorder prediction 605 648 - -
Lele08g0958 1038 Gene3D - 72 200 IPR008942 -
Lele08g0958 1038 SMART 558neu5 78 200 IPR006569 -
Lele08g0958 1038 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 59 1035 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Lele08g0958 1038 MobiDBLite consensus disorder prediction 679 735 - -
Lele08g0958 1038 CDD CID_Pcf11 80 192 - -
Lele08g0958 1038 ProSiteProfiles CID domain profile. 75 203 IPR006569 -
Lele08g0958 1038 MobiDBLite consensus disorder prediction 280 298 - -
Lele08g0958 1038 MobiDBLite consensus disorder prediction 605 664 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0958 Lele-ChrLele08 6049236 6056435 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g0958 74 414 C2H2 Transcription Factor Family AT4G04885 38.227 1.70e-56 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele08g0958 CID 4.8e-14 CL0020
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele13g1683 13 25466331 25468553 Lele08g0958 08 6049236 6056435 CCT
Lele14g1622 14 23849259 23849636 Lele08g0958 08 6049236 6056435 CCT
Lele15g0736 15 4260664 4262545 Lele08g0958 08 6049236 6056435 CCT
Lele16g0742 16 4202395 4204115 Lele08g0958 08 6049236 6056435 CCT
Lele08g0958 08 6049236 6056435 Lele08g0958 08 6049236 6056435 ECH
Lele05g1105 05 6885948 6893343 Lele08g0958 08 6049236 6056435 hybridization
Lele06g0971 06 6003845 6006671 Lele08g0958 08 6049236 6056435 hybridization