Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0954 ATGATCATCAGGATCATGTCGGAAGAATATGGATACCAAAGGAGTGGGAAGAAATGCAGGGAAAAATTCGAGAACTTGTACAAATATTACAAGAAGACAAAGGAAGGGAAGGCGAGGAGACAGGATGGGAAGCATTACAGGTTCTTCCGTCAACTTGAAGCTTTGTATGGAGGGAGCAGCAAGTCAGCCTCAGTACCAGAAACCAATTATGGTAGCAGCAGAATTGGCTTTCAGACACCCTCCCAAATAAATCAAGACATGTTTCAGTCTCACAACCACAAGACTTGCGATAGCCTCAGCCTCACGAACTCAACAGATTTCGCCACGTCATCATCGGAGGACAACAATGTTTGCAGCATGGAAAATGATTCCACGGAGAAGGGGAGGAAGAGGAGTAGTGGAAGCAGATGGAAGGCCAAAATAAAAGAGTTCATCGACTCACAGATGAAGAAGCTGATTGAGAAGCAAGAGGCGTGGATGGATAGGCTCGTGAAGACGCTTGAACAGAAGGAGAAGGAGAGGGTTTTAAGAGAGGAAGAATGGAGAAGACAAGAAGCTGAGAGGTTGGAAATGGAGCACAAGTTTCGGGCTAAAGAGAGAGCGTGGATTGAAGCAAGGGATGCTGCTCTAATGGACGCCTTGCAGAAACTAACGGGGAGAGAGGTAAACGCCCAATCTCCTGTTGAGCAGGCTCTAATTATGGCTAACGAAATTCAGAATCATAATGAAAACCAGAACGAAGAGGGAGGTGAAATCCCCAACGGTAGTCATAGAGGTGTTGAGAACTGGTCAAAAAGTGAGATTACAAGGCTCCTAGAATTGAGGGCGGGGAGGGAATCCGGGTTTCAGCAAAGTGGGTGTTCGGAAGAGGTTATGTGGGGGGAAGTAGCCAACAAAATGGCTTGCTTTGGCTACGAGAGGACTGCTTTGATGTGCAAACACAAGTGGGAATGCATAACCAGTTATGCAAATGCCAAGGAAGGAATCAAGAAGCGCAAGGAAAAGTCTAGAAGCTGTTTTTACTTCGACAACATCATCAATGACCAGCCATCCTTGTATAACCAACAAGCAACTACTCCGTATTGTGATATGAACGTTAACGATCAACGGCACGACAATGAGAGGCTACAAACAAATGATGGCTCTTCGCCTTCAAATTCCAATGCGGTTGCTGCTGAAGTTAACTGCTTTCCGTTCTTTATTAGCACGGAAGGATCAGAAAATTTGTGGGAAAACTACGACATGAAGATTAATAAAGGAAATCAAAACCACCAGTGA 1278 0.4515 MIIRIMSEEYGYQRSGKKCREKFENLYKYYKKTKEGKARRQDGKHYRFFRQLEALYGGSSKSASVPETNYGSSRIGFQTPSQINQDMFQSHNHKTCDSLSLTNSTDFATSSSEDNNVCSMENDSTEKGRKRSSGSRWKAKIKEFIDSQMKKLIEKQEAWMDRLVKTLEQKEKERVLREEEWRRQEAERLEMEHKFRAKERAWIEARDAALMDALQKLTGREVNAQSPVEQALIMANEIQNHNENQNEEGGEIPNGSHRGVENWSKSEITRLLELRAGRESGFQQSGCSEEVMWGEVANKMACFGYERTALMCKHKWECITSYANAKEGIKKRKEKSRSCFYFDNIINDQPSLYNQQATTPYCDMNVNDQRHDNERLQTNDGSSPSNSNAVAAEVNCFPFFISTEGSENLWENYDMKINKGNQNHQ 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0954 425 Coils Coil 153 189 - -
Lele08g0954 425 MobiDBLite consensus disorder prediction 107 122 - -
Lele08g0954 425 PANTHER FI21293P1 4 386 - -
Lele08g0954 425 Gene3D - 1 32 - -
Lele08g0954 425 Gene3D - 263 323 - -
Lele08g0954 425 CDD GT1 261 322 - -
Lele08g0954 425 MobiDBLite consensus disorder prediction 107 134 - -
Lele08g0954 425 ProSiteProfiles Myb-like domain profile. 262 320 IPR001005 -
Lele08g0954 425 Coils Coil 228 248 - -
Lele08g0954 425 Pfam Myb/SANT-like DNA-binding domain 262 344 IPR044822 -
Lele08g0954 425 Pfam Myb/SANT-like DNA-binding domain 4 55 IPR044822 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0954 Lele-ChrLele08 6022503 6023780 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g0954 2 419 Trihelix Transcription Factor Family AT5G03680 46.000 4.54e-106 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Lele08g0954 Myb_DNA-bind_4 4.5e-11 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele08g0954 08 6022503 6023780 Lele13g1689 13 25515797 25516342 CCT
Lele08g0954 08 6022503 6023780 Lele14g1629 14 23902249 23902794 CCT
Lele08g0954 08 6022503 6023780 Lele15g0728 15 4208018 4208563 CCT
Lele08g0954 08 6022503 6023780 Lele16g0733 16 4148732 4149277 CCT
Lele08g0954 08 6022503 6023780 Lele08g0954 08 6022503 6023780 ECH
Lele05g1100 05 6859519 6862203 Lele08g0954 08 6022503 6023780 hybridization
Lele06g0966 06 5977716 5980387 Lele08g0954 08 6022503 6023780 hybridization