Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0947 ATGGACTTCCAACTGAAGCAATGGAAAAGCCAGCACGAGTCTGAATCAGAAGAATATCATTTCGCAAAGATGCCCAGGCTAATGCTTGAGTCCCATCTACACCCACCACCGCATTCCTCCCCCTCTTCCCCTGCTCTCGCTCTCTTTGTTCCCGAACTCAACACCAAAGGCGGCTCGCTCTCCGCGTTTTCTGATTCCTCATTCCCCCCCACCAGATTTCCAAGAATGGGGAGTTATTTCAGTGTGGCTCAGTGGCAGGAGCTGGAGTTGCAGGCACTGATATTCAGGTACATACTGGCGGGTGCTGCTGTTCCCCATGAGCTTCTTCTGCCAATTAAGAAGAGCCTTCTTCATTCTGCTCCTTATTTCCTCCATTATCAGCCTTCTCTGTTGCAATCGGGATACTGGGGAGGAGCTACCATGGATCCAGAGCCCGGCCGATGCCGAAGGACGGACGGCAAGAAATGGCGGTGCTCTAGAGACGTGGTGGCCGGCCAGAAGTACTGTGAGCGCCACATGCATCGCGGTCGAAACCGTTCAAGAAAGCCTGTGGAAGTACCCACGCCAGCCACTGCAGGAGGCGTTGTCGGCGTCGGCGTCGGGTGTCCCTCTGCCACAACAGCCTCTGCATCTGCCACTACGCATATGACACCAACAGCGTTGAGATCCCCTTTCGATCTCCTTCAGCTGAAACGATGTTCATCTGTGACCATCAAGAATGAAAATGAGAGGGTATTTGAAAACCAAAATCGGGATCATGTGGACGGTGCGGGGAGATCAGATGGGCATATTCTGCGACATTTTTTCGATGATTGGCCACGATCACTTCAGGAACCTGACAATGCCGAAAGTAACGCTAGCTCCATCAACTCAGCCACGTGCCTTTCCATTTCAATGCCCGGAAATGCTTCGTCGGACGTGTCCCTGAAATTGTCCACTGGCGATGATGCAGAGGATCCATGTCCCAGAAGTGGGGATGTGGGCCCACAGCATTTGCAGTTGAATTGGGCAGGAGGATGGGCTTCTTCGGCTAACCATGTGGCTTCCATGGGAGGACCACTCGCAGAGGCTCTCAGATCATCCACCACAACGTCTTCACCCACGAGTGTCTTACACCAGTTGCCTCGTAGTTCTGCTTCTGAAACCAGCTTCATTAGCACCTAG 1164 0.5301 MDFQLKQWKSQHESESEEYHFAKMPRLMLESHLHPPPHSSPSSPALALFVPELNTKGGSLSAFSDSSFPPTRFPRMGSYFSVAQWQELELQALIFRYILAGAAVPHELLLPIKKSLLHSAPYFLHYQPSLLQSGYWGGATMDPEPGRCRRTDGKKWRCSRDVVAGQKYCERHMHRGRNRSRKPVEVPTPATAGGVVGVGVGCPSATTASASATTHMTPTALRSPFDLLQLKRCSSVTIKNENERVFENQNRDHVDGAGRSDGHILRHFFDDWPRSLQEPDNAESNASSINSATCLSISMPGNASSDVSLKLSTGDDAEDPCPRSGDVGPQHLQLNWAGGWASSANHVASMGGPLAEALRSSTTTSSPTSVLHQLPRSSASETSFIST 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0947 387 Pfam WRC 143 185 IPR014977 -
Lele08g0947 387 MobiDBLite consensus disorder prediction 306 330 - -
Lele08g0947 387 ProSiteProfiles QLQ domain profile. 79 114 IPR014978 GO:0005524|GO:0005634|GO:0006355
Lele08g0947 387 SMART QLQ_2 78 114 IPR014978 GO:0005524|GO:0005634|GO:0006355
Lele08g0947 387 ProSiteProfiles WRC domain profile. 142 186 IPR014977 -
Lele08g0947 387 Pfam QLQ 80 112 IPR014978 GO:0005524|GO:0005634|GO:0006355
Lele08g0947 387 MobiDBLite consensus disorder prediction 358 387 - -
Lele08g0947 387 PANTHER GROWTH-REGULATING FACTOR 5 52 306 IPR031137 GO:0005634|GO:0006351|GO:0032502
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0947 Lele-ChrLele08 5968413 5970383 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g0947 1 374 GRF Transcription Factor Family AT3G52910 49.242 5.61e-93 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Lele08g0947 WRC 2.4e-22 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele08g0947 08 5968413 5970383 Lele08g0947 08 5968413 5970383 ECH
Lele05g1095 05 6808068 6809993 Lele08g0947 08 5968413 5970383 hybridization
Lele06g0961 06 5920027 5921971 Lele08g0947 08 5968413 5970383 hybridization