Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0942 ATGAAGGTGATCGCGGCGTATTTGCTCGCCGTGTTGGGTGGCAACACTAGCACTTCCGCCGATGATATCAAAAATATCCTTGGCTCTGTTGGAGCAGAAGCTGATGATGATAGAATTGAGCTTTTCTTGTCTGAATTGAAGGGTAGAGATATAACTGAGGTTATTGCCAGCGGTAGGGAAAAGTTGGCCTCAGTGCCTTGTGGTGGTGGAGCTGCAGTTGCAATGGCTGCTGCGCCTGGAGCTGGTGGTGCCGCCGCCGCTCCAGCTGCTGAGTCAAAGAAAGAGGAGAAGGTGGAGGAGAAAGAGGAATCTGATGATGATATGGGCTTCAGCCTCTTCGATTAA 345 0.5072 MKVIAAYLLAVLGGNTSTSADDIKNILGSVGAEADDDRIELFLSELKGRDITEVIASGREKLASVPCGGGAAVAMAAAPGAGGAAAAPAAESKKEEKVEEKEESDDDMGFSLFD 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0942 114 FunFam 60S acidic ribosomal protein P2 1 59 - -
Lele08g0942 114 MobiDBLite consensus disorder prediction 84 114 - -
Lele08g0942 114 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 1 114 IPR044076 GO:0002182|GO:0003735|GO:0022625
Lele08g0942 114 Pfam 60s Acidic ribosomal protein 19 113 - -
Lele08g0942 114 Gene3D - 1 59 IPR038716 -
Lele08g0942 114 CDD Ribosomal_P2 1 114 IPR044076 GO:0002182|GO:0003735|GO:0022625
Lele08g0942 114 Hamap 50S ribosomal protein L12 [rpl12]. 2 114 IPR027534 GO:0003735|GO:0005840|GO:0006414
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0942 Lele-ChrLele08 5933430 5934579 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g0942 1 114 Cytoplasmic Ribosomal Protein Gene Family AT3G44590 64.035 1.82e-31 105
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele07g1131 07 6821193 6822351 Lele08g0942 08 5933430 5934579 ECH
Lele08g0942 08 5933430 5934579 Lele08g0942 08 5933430 5934579 ECH
Lele05g1090 05 6784087 6785238 Lele08g0942 08 5933430 5934579 hybridization
Lele06g0955 06 5885458 5886539 Lele08g0942 08 5933430 5934579 hybridization