Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0933 ATGGCAGAAGAGCAACGATGCCAAACATCCGAAGGCTACCGGCTCTGCGCCAACAACTGCGGCTTCTTCGGAAGTCCGGCCACCATGAATCTCTGTTCCAAATGCTACAGAGATTTCTGTCTCCAGGAACAAGAAGAAGCCGCAACGAAATTAACCATAGAAACCGCTCTCTCCTCGTCATCTGCCCCTGCGCCTTCGCTGGCCACGGAGTCCCTCCATTCTCTGGAGGCGTCGAAAGCGCCGGATGTTACGATGGACGCGTCGATCTGGGCGCCGGCAGTCGCCATACCAGATGGGACGGCGGCGGCGCAACCAAACCGATGTGCTACGTGTCGTAAAAGGGTCGGGTTTACCGGGTTCAAGTGCAAGTGCGGGATCACGTTTTGTGGCGTCCACAGGTACCCGGAGAAACACGGGTGTAGCTTTGATTTCAAGGGGGTGGGGCGAGAGGAAATAAGTCGAGCGAATCCTGTGGTCCTAGCGGAGAAGCTCCATAAGATTTAA 504 0.5595 MAEEQRCQTSEGYRLCANNCGFFGSPATMNLCSKCYRDFCLQEQEEAATKLTIETALSSSSAPAPSLATESLHSLEASKAPDVTMDASIWAPAVAIPDGTAAAQPNRCATCRKRVGFTGFKCKCGITFCGVHRYPEKHGCSFDFKGVGREEISRANPVVLAEKLHKI 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0933 167 Pfam A20-like zinc finger 14 37 IPR002653 GO:0003677|GO:0008270
Lele08g0933 167 SMART A20_3 13 37 IPR002653 GO:0003677|GO:0008270
Lele08g0933 167 ProSiteProfiles Zinc finger AN1-type profile. 102 148 IPR000058 GO:0008270
Lele08g0933 167 Pfam AN1-like Zinc finger 108 144 IPR000058 GO:0008270
Lele08g0933 167 Gene3D - 1 66 - -
Lele08g0933 167 FunFam Zinc finger AN1-type containing 6 89 163 - -
Lele08g0933 167 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 15 57 - -
Lele08g0933 167 PANTHER AN1-TYPE ZINC FINGER PROTEIN 14 167 - -
Lele08g0933 167 SUPERFAMILY AN1-like Zinc finger 102 162 IPR035896 -
Lele08g0933 167 Gene3D - 84 162 IPR035896 -
Lele08g0933 167 ProSiteProfiles Zinc finger A20-type profile. 10 44 IPR002653 GO:0003677|GO:0008270
Lele08g0933 167 SMART AN1_Zf_4 108 145 IPR000058 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0933 Lele-ChrLele08 5864643 5865146 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g0933 1 167 C2H2 Transcription Factor Family AT3G52800 53.529 8.30e-56 171
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele08g0933 08 5864643 5865146 Lele08g0933 08 5864643 5865146 ECH
Lele06g0945 06 5819763 5820263 Lele08g0933 08 5864643 5865146 hybridization