Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0891 ATGTTAATTTGACTGTCATGTGTAACTACGGAAAAGGGATTGTCAGAAGCATTTTCCTGCAAAATTGTGATGGACAAGGTATCAGACAGATCAAGAGGGTTTGGGTTTGTCACCTTTGCCTCAGAGGATGAGGCTGAGAATGCCATAACAGGGATGGATGGGAAGGAACTAAACGGTCGTGTTATCTTTATGGATTATGCAAAACCCAAATCCAATAATGGTGGTGGAATGCCAATTGCCAGAGGACCTCCCGAACCAACAGCACACAGTTAA 273 0.4359 MLIXLSCVTTEKGLSEAFSCKIVMDKVSDRSRGFGFVTFASEDEAENAITGMDGKELNGRVIFMDYAKPKSNNGGGMPIARGPPEPTAHS 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0891 90 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 19 62 IPR000504 GO:0003723
Lele08g0891 90 MobiDBLite consensus disorder prediction 70 90 - -
Lele08g0891 90 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 69 IPR000504 GO:0003723
Lele08g0891 90 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 5 80 - -
Lele08g0891 90 Gene3D - 5 85 IPR012677 -
Lele08g0891 90 SUPERFAMILY RNA-binding domain, RBD 9 83 IPR035979 GO:0003676
Lele08g0891 90 SMART rrm1_1 2 65 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0891 Lele-ChrLele08 5631554 5632785 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g0891 12 64 Eukaryotic Initiation Factors Gene Family AT2G23350 46.667 1.17e-09 51.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele08g0891 08 5631554 5632785 Lele08g0891 08 5631554 5632785 ECH
Lele05g1043 05 6483759 6485752 Lele08g0891 08 5631554 5632785 hybridization