Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0888 ATGGTCAAGCAGCAGCATCAACTACAAGGCATCGTCCTTATGGAACCAATCCACAACATCATCAACTCGTGCACGCGCTCTTTCAACCCTGAGGAAGAAGATGAGGACCAAAAGGAAACCATGTTCGAGAAGGCCTTAACGCCGAGCGACGTTGGGAAGCTGAACCGACTGGTGATCCCCAAGCAGCACGCCGAGAAGTACTTCCCACTCAGCGGTGGGGCTGCCGACGCCAAGGGCGTCTTGCTGAGTTTCGAGGATGAGTCCGGCAAGTGCTGGCGCTTCCGATACTCTTACTGGAACAGTAGCCAGAGTTACGTCTTGACCAAAGGCTGGAGCCGTTACGTCAAGGACAAACACCTCGACGCCGGCGACGTTGTTTCCTTTCACCGTCACCTTACAGATTCTCACCGACTTTTCATCTCCTGGAGGTGCCGCAATCCTCATGCCAGTCCACCAGTTACCAGGCGTACGCATATGGCCGTCGCAAGCGATGCCACTTCCAGAGGTGGCCATGGGGGTGTAGGATGGACCTCCCCTACACCTTTCTGTTCTGGGCATACTTATCCCGAACATCAACTTTTGCCATATCAACCTCAAACTCTTCATGCACCAGGAGGAGGTTTGCCAGCTGAAAGGACGGCGGTGGGAAACAGTTCAAGTAAAGTGCTGAGACTATTCGGAGTGAACATGGAATGCCAAGCAGAAGAAGCAGATGAATCAGGAGCTTCGACATCGCAGCACTCCTCCAACGTCTCATCATCATCTACGCTTCATCATTTCTACCAATATGATTATCCTCAGCCTTCATATGCTTCCAGTCCTCAATGCCACATGGTACGTCAACAATCATACTTCTGA 858 0.5198 MVKQQHQLQGIVLMEPIHNIINSCTRSFNPEEEDEDQKETMFEKALTPSDVGKLNRLVIPKQHAEKYFPLSGGAADAKGVLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKHLDAGDVVSFHRHLTDSHRLFISWRCRNPHASPPVTRRTHMAVASDATSRGGHGGVGWTSPTPFCSGHTYPEHQLLPYQPQTLHAPGGGLPAERTAVGNSSSKVLRLFGVNMECQAEEADESGASTSQHSSNVSSSSTLHHFYQYDYPQPSYASSPQCHMVRQQSYF 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0888 285 Gene3D - 31 152 IPR015300 -
Lele08g0888 285 FunFam B3 domain-containing protein 35 154 - -
Lele08g0888 285 SUPERFAMILY DNA-binding pseudobarrel domain 37 142 IPR015300 -
Lele08g0888 285 SMART B3_2 42 146 IPR003340 GO:0003677
Lele08g0888 285 ProSiteProfiles B3 DNA-binding domain profile. 42 146 IPR003340 GO:0003677
Lele08g0888 285 CDD B3_DNA 41 136 IPR003340 GO:0003677
Lele08g0888 285 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 30 245 IPR044800 GO:0003700
Lele08g0888 285 Pfam B3 DNA binding domain 42 143 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0888 Lele-ChrLele08 5608229 5611550 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g0888 35 238 RAV Transcription Factor Family AT5G06250 53.052 1.87e-63 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lele08g0888 B3 1.6e-28 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele08g0888 08 5608229 5611550 Lele08g0888 08 5608229 5611550 ECH
Lele06g0899 06 5584799 5589669 Lele08g0888 08 5608229 5611550 hybridization