Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0885 ATGGGAAGAGTCCGCACTAAAACCGTGAAGAAATCTTCGCGCCAAGTGATTGAGAAGTACTACTCTCGAATGACCCTCGATTTTCACACAAACAAGAAAATCCTGGAGGAGGTGGCTCTCATTCCCTCCAAGAGGCTCCGCAATAAGATTGCGGAATTCTCCACTCACCTGATGAAGAGGATCCAGAAGGGTCCCGTTCGGGGTATCTCCCTCAAGCTTCAAGAGCAGGAGCGCGAGCGCAGAATGGATTTCGTGCCCGATGTTTCTGCGATTAAGACGGACCAGATTGAGGTCGATAAGGAGACTCTAGATATGCTCAGCGCTCTTGGCATGAGCGAGATTCCAGGGCTTGTTCAAGTTGATCCTGTTCCCGTTCAGCAGTCCTTTGGATTTGGCCGCGGTGGTTTTGGTGGGGCTGGCAGGAGGTTCTGA 432 0.5162 MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVALIPSKRLRNKIAEFSTHLMKRIQKGPVRGISLKLQEQERERRMDFVPDVSAIKTDQIEVDKETLDMLSALGMSEIPGLVQVDPVPVQQSFGFGRGGFGGAGRRF 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0885 143 FunFam 40S ribosomal protein S17 1 62 - -
Lele08g0885 143 Gene3D - 1 62 IPR036401 GO:0003735|GO:0005840|GO:0006412
Lele08g0885 143 Hamap 30S ribosomal protein S17e [rps17e]. 1 63 IPR001210 GO:0003735|GO:0005840|GO:0006412
Lele08g0885 143 PANTHER 40S RIBOSOMAL PROTEIN S17 1 127 IPR001210 GO:0003735|GO:0005840|GO:0006412
Lele08g0885 143 SUPERFAMILY Rps17e-like 1 62 IPR036401 GO:0003735|GO:0005840|GO:0006412
Lele08g0885 143 Pfam Ribosomal S17 1 120 IPR001210 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0885 Lele-ChrLele08 5592208 5592639 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g0885 1 134 Cytoplasmic Ribosomal Protein Gene Family AT5G04800 81.159 1.13e-76 222