LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele08g0858	ATGGGGTCTTTCCGGGTCGAGCGTGACGTACCATCACAGGGTCAGGCGCCAGCCATGTCAGGGGATGATATCCGTGCGTCAGGTGGGTCATCGTCCTCGGCGTCTGGAGTTACTAATGGCGTTTCAGGGATTCAGAGCATGCTCCTGGGCTCTAAGTACTTGAAGGCAGCGCAGGAACTGCTAGACGAGGTCGTGAACGTGAACGATGGCATAAAGAGCGAAATGGCAAAGAAAAGTAGCAGCCAGACGAAGGCGATTAAAGAGTCTTCCACGGGGGCAAGTGGAGATGGCTCGCCTGCCGGAGATGGAAGCGCCAAGCCCAGCCCTGAGCTCTCAACTGCGGAGAAACAAGATATTCAGATGAAGAAGGCGAAGTTAATCACCATGCTTGACGAGGTGGAGCAGAGGTACAGACAATATCACCATCAGATGCAGATAGTGAGTTCTTCATTTGAACAAGCTGCAGGGATTGGGTCGGCGAGAACATACACAGCACTGGCACTTCAAACAATCTCGAAGCAGTTTCGGTGTTTGAAAGATGCAATATTGGGCCAAATTCGAGCTGCCAACAAGAGCTTAGGAGAGGAAGATTGCTTTGGTACAAAAATGGAAGGTTCCAGGCTTAAATACGTGGACCATCATCTTCGCCAACAGCGAGCTCTCCAACAGTTGGGAATGATCCAGCACAATGCTTGGAGACCCCAGAGAGGATTGCCTGAAAGATCTGTTTCTGTTCTTCGCGCTTGGCTTTTCGAGCACTTCCTCCACCCTTACCCCAAGGACTCTGACAAACACATGCTTGCAAAACAAACAGGGCTCACCAGGAGCCAGGTCTCAAATTGGTTCATAAATGCGCGAGTCCGATTGTGGAAGCCGATGGTGGAAGAAATGTACAAGGAGGAGATGAAGGAGCACGAACAGAACGGTGGGGATGAGAGATCAAGCAAGAGTAGTGAAGATCCTGCCATGAAAGCTGCAGCAGCCCCACAAGAGAAATCTCCTGCCTCTGCCACTGAACCCAAAAGCTTGAATTTCAAACAAGACATTTCCACAAACCCCAACCCTCCAACAGTTTCTGTATCTACGCCATCAACATCACCAGTTGGAAGAAATGCCAGAAACCACCCAGGGTTCAGCTTCATGGGCACTTCAGAGCTAGATGGAATCGCACAACCGAGTCCCAAGAAACCAAGGAACCATGAGATTCTGCAGTCCACAATCAATGTTGATATGAAGCCTGATGATGCGGGGAATGGTCAAATCTCCATGAAATTTGGCGATGAGAGGCAGAGCAGAGATGGGTACTCTTTCATGGGAAATCAGACGAACTTCATCGGGGGATTTGGGCAATACCCAATCGCAGAAATTGATAGGTTTGAAGCAGAGCAATTCACACCAAGGTTCTCAGGTAATAATGGGGTTTCCCTCACTCTTGGTCTTCCGCACTGTGACTCATTATCAGCAGCAACACATCAAACATTTCTTCCAAACCAGAGTATTCAACTTGGGAGAAGGATGGAGCTGGGTGAACCAAACGAGTTTGGTGGTATAAACACTTCAACTCCTCTCTCTTCAGCTGCATTTGAGAATATCAATATGCAGAACCCCAAGAAGTTTGCTGCACAATTGTTGCCAGACTTCGTGGCTTGA	1650	0.4897	MGSFRVERDVPSQGQAPAMSGDDIRASGGSSSSASGVTNGVSGIQSMLLGSKYLKAAQELLDEVVNVNDGIKSEMAKKSSSQTKAIKESSTGASGDGSPAGDGSAKPSPELSTAEKQDIQMKKAKLITMLDEVEQRYRQYHHQMQIVSSSFEQAAGIGSARTYTALALQTISKQFRCLKDAILGQIRAANKSLGEEDCFGTKMEGSRLKYVDHHLRQQRALQQLGMIQHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYKEEMKEHEQNGGDERSSKSSEDPAMKAAAAPQEKSPASATEPKSLNFKQDISTNPNPPTVSVSTPSTSPVGRNARNHPGFSFMGTSELDGIAQPSPKKPRNHEILQSTINVDMKPDDAGNGQISMKFGDERQSRDGYSFMGNQTNFIGGFGQYPIAEIDRFEAEQFTPRFSGNNGVSLTLGLPHCDSLSAATHQTFLPNQSIQLGRRMELGEPNEFGGINTSTPLSSAAFENINMQNPKKFAAQLLPDFVA	549

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele08g0858	549	Pfam	Associated with HOX	47	182	IPR006563	-
	Lele08g0858	549	MobiDBLite	consensus disorder prediction	301	371	-	-
	Lele08g0858	549	CDD	homeodomain	232	293	IPR001356	GO:0003677
	Lele08g0858	549	FunFam	BEL1-like homeodomain protein 9	235	297	-	-
	Lele08g0858	549	Pfam	Homeobox KN domain	249	288	IPR008422	GO:0003677\|GO:0006355
	Lele08g0858	549	PANTHER	HOMEOBOX PROTEIN TRANSCRIPTION FACTORS	33	318	-	-
	Lele08g0858	549	MobiDBLite	consensus disorder prediction	75	118	-	-
	Lele08g0858	549	MobiDBLite	consensus disorder prediction	301	319	-	-
	Lele08g0858	549	Gene3D	-	235	314	-	-
	Lele08g0858	549	MobiDBLite	consensus disorder prediction	335	371	-	-
	Lele08g0858	549	SMART	prehox3	42	184	IPR006563	-
	Lele08g0858	549	MobiDBLite	consensus disorder prediction	75	97	-	-
	Lele08g0858	549	MobiDBLite	consensus disorder prediction	25	41	-	-
	Lele08g0858	549	ProSiteProfiles	'Homeobox' domain profile.	229	292	IPR001356	GO:0003677
	Lele08g0858	549	SUPERFAMILY	Homeodomain-like	233	299	IPR009057	-
	Lele08g0858	549	Coils	Coil	116	136	-	-
	Lele08g0858	549	MobiDBLite	consensus disorder prediction	1	41	-	-
	Lele08g0858	549	SMART	HOX_1	232	296	IPR001356	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele08g0858	Lele-ChrLele08	5414348	5416272	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele08g0858	21	549	Homeobox Transcription Factor Family	AT2G35940	53.833	2.02e-162	476

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-BELL	Lele08g0858		POX	2.5e-50	No_clan