Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0857 ATGGATCAAGTTGAGATTCCTGAGTATTTCATATGCCCCATATCCCTCGAAATCATGAAAGACCCCGTTACTGCCGTTACCGGCATCACTTACGATCGTGAAAGCATCGAACGCTGGCTCTTCACCTCCAACAACACCACTTGCCCGGTCACCAAACAGACTGTGCCGTTAGACTCCGACTTGACCCCCAACCACACCCTTCGCCGCCTCATTCAAGCTTGGTGCACTCAGAATGCCTCCCTCGGCGTCGATCGTATTCCCACGCCCAAACCTCCCCTCGACAAGTTTCAGGTCCTCAAAATCCTCTCCCATCTTCGCAGCCCTCACCTGTATCTCAAAGCTCTCCGCCAGTTAGAACTGCTCGCCGCCGAGAACCACCGGAATAAGAGGTGTCTGGTGGAGGCTGGTGTTCCCGGGGCGATGGTCTTGTTCGTTTTGGATTGTTTTCAGAAACGATGGATTCGCGAGGGGCTCGAAGAGGCTCTCAGTTTGTTGCAGTTTGTTAAGGTTCCCCAAGAGGAAATCAGGCTGCTTCTGCAGCAAAATGATCAGGTTTTGGATTCTCTCACGTGGGTTTTAGCCTCTGAAATAATGAACAACTCTGTGACTCTCAAGTCCCACACGATTACGGTGCTCAAAACGATCATCCAGAAGGCCAGCTCCGGCGTCATGGAGAGACTCAAACCCGAGTTCTTTGAAACAGTTGTGAAAGTCCTACGAAATGGAATAACCCTGCAAGGGATGAACGCTGGTCTGAAAGTGCTGTTAGCAGCTTGTCCGTGGGGAAGAAATCGCCAGTTGATGGTGGAGGCCGGTACAGTTCATGAGTTGATTGAGATTGAGCTGGGGACGCCGGAGAAGACAACGACGGAGCTAATATTAGGAATACAGTTTCATCTGTGTTCTTGCGCCAGTGGGAGAGCAGAGTTCGTGAGTCACAGAGGCGGCATTGCGGTGTTGACGGAGAGAATATTGAAGGTGTCGCCGGCGGCCGATGAAAGAGCCATATTTGTGCTGTCACAGGTATCAAAGTCATGTGCTTCGCAAGCAGTAATCCAGGAGATGTTGCAGCTTGGGACATTGTCGAGGCTTTGCATGTTGCTTCAGGCCGATCATCCTTCATATCTAAAAGACAAGGCAATGGACATCCTCAAGTCCCATTCTGAGGTTTGGAAGAACTCGCCTTGCTTTCCTGGATCTTTTAAAGCAAGTTTGCACAGGTGA 1224 0.5065 MDQVEIPEYFICPISLEIMKDPVTAVTGITYDRESIERWLFTSNNTTCPVTKQTVPLDSDLTPNHTLRRLIQAWCTQNASLGVDRIPTPKPPLDKFQVLKILSHLRSPHLYLKALRQLELLAAENHRNKRCLVEAGVPGAMVLFVLDCFQKRWIREGLEEALSLLQFVKVPQEEIRLLLQQNDQVLDSLTWVLASEIMNNSVTLKSHTITVLKTIIQKASSGVMERLKPEFFETVVKVLRNGITLQGMNAGLKVLLAACPWGRNRQLMVEAGTVHELIEIELGTPEKTTTELILGIQFHLCSCASGRAEFVSHRGGIAVLTERILKVSPAADERAIFVLSQVSKSCASQAVIQEMLQLGTLSRLCMLLQADHPSYLKDKAMDILKSHSEVWKNSPCFPGSFKASLHR 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0857 407 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Lele08g0857 407 CDD RING-Ubox_PUB 10 53 IPR045210 -
Lele08g0857 407 SUPERFAMILY ARM repeat 99 374 IPR016024 -
Lele08g0857 407 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 81 IPR013083 -
Lele08g0857 407 FunFam RING-type E3 ubiquitin transferase 1 84 - -
Lele08g0857 407 Pfam U-box domain 6 78 IPR003613 GO:0004842|GO:0016567
Lele08g0857 407 Gene3D - 89 395 IPR011989 -
Lele08g0857 407 PANTHER WDSAM1 PROTEIN 3 398 IPR045185 GO:0061630
Lele08g0857 407 SUPERFAMILY RING/U-box 3 82 - -
Lele08g0857 407 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0857 Lele-ChrLele08 5407226 5408449 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g0857 2 397 U-box Gene Family AT3G11840 42.857 7.24e-117 347