Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0856 ATGATATTACTACGAGGAGTATGGAGACCAGTTCTGCAAAATGTAGGCGTTTGTATAAAAAATGGAAAGAAGCAAGTTGGTGAGGGGAAGGATCGATCTTCTTCTACTCCTTCGACTACTTTATCCGACTTCAACCTTCTTTCCAGCCAGGGTTTTCTCAGAGACATGGACGACAATATTGAAGTTCCTACCTTCTTCCTGTGCCCCATCTCCTTGGAAATCATGAAGGATCCAATCACCGTCTCCTCCGGGATTACCTACGACAGAGAGAGCATCGAGAAATGGCTCTTCTCCGGCAAAAACAAGACCTGCCCAGTCACCAAAATACCTCTCTCCGTATCTGACTCCTCCGACCTCCTTCCCAATCACACCCTTCGTCGTTTGATTCAATCCTGGTGTACCCTCAACGCCTCTCACGGCATCCAAAGGATTCCCACGCCAAAACCACCCGTCACCAAAACCCAGGTTGCCAAAATCATCAAAGACGCTTCTCGATCTTCTCTTTCCCCAGTTAAATGCCTCCAAACGCTCAAATCCATTGCTTCCGAAAGCGACGCCAATAAACGTAGCATAGAAGCCGCCGGCGCCGTTGAATTCTTGGCATCCATTGTACTCCGTCACACAAATTTCTCCTACACACCAGAAGAGGCCAGCCCTGATGATGATGGGTTTGAATTGAAAACCAGCGGAGGCGACGAAGCCTTAAGCATCCTCCATATCCTCCACCTGTCCGAGGCCGGCTTCAAGAGTCTCGTAACCTTCGAAAACGGATCATTCATGGAATGCTTAACCAGAATCATGCAGAGGGGATTCTACGAGTCACGAGCTTATGCGGTCTTGTTGTTAAAATCCATGTTTGAAGTGGCTGATCCGACGGTTTTATCCCATTTGAAACCTGAAATGTTCATTGAATTAGTTCAACTGTTGAAAGACCAGATATCTCAGCAAGCCTCGAAGGCGACTCTAAGAACACTGATCCAAATATGTCCATGGGGGAGAAACAGAATAAGGGCCGTGGAAGCAGGAGGCGTATCGGTGCTGATAGAGCTTCTTCTAGACTGTAAGGACAGGAAGCCATGTGAGATGATGATGGTGTTATTGGAGATGCTATGTGGGTGTGCCGAGGGGAGAGCTGAGTTACTGAGTCATGGAGCAGGAATCGCAATAGTTTCAAAGAAGATTCTGAGGGTGTCGACGATGGCCAACGATAGGGCGGCGAGGATTCTGCTGTCCATTGCCAAGTTCTCTGCAACTCCAAGCGTATTGCAGGAAATGTTGCATGTTGGGGTAGTGGCGAAGCTGTGTTTGGTGCTTCAAGTGGAGGGTGGACGAAAGGCTCAGGAGAAATCCAGAGAGATCCTCAGAATGCATTCTCGGACTTGGAGGAATTCTCCATGCGTACCCAGCAATTTGCTTTTTTCTTACCCTAATTGA 1434 0.4805 MILLRGVWRPVLQNVGVCIKNGKKQVGEGKDRSSSTPSTTLSDFNLLSSQGFLRDMDDNIEVPTFFLCPISLEIMKDPITVSSGITYDRESIEKWLFSGKNKTCPVTKIPLSVSDSSDLLPNHTLRRLIQSWCTLNASHGIQRIPTPKPPVTKTQVAKIIKDASRSSLSPVKCLQTLKSIASESDANKRSIEAAGAVEFLASIVLRHTNFSYTPEEASPDDDGFELKTSGGDEALSILHILHLSEAGFKSLVTFENGSFMECLTRIMQRGFYESRAYAVLLLKSMFEVADPTVLSHLKPEMFIELVQLLKDQISQQASKATLRTLIQICPWGRNRIRAVEAGGVSVLIELLLDCKDRKPCEMMMVLLEMLCGCAEGRAELLSHGAGIAIVSKKILRVSTMANDRAARILLSIAKFSATPSVLQEMLHVGVVAKLCLVLQVEGGRKAQEKSREILRMHSRTWRNSPCVPSNLLFSYPN 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0856 477 Pfam U-box domain 62 134 IPR003613 GO:0004842|GO:0016567
Lele08g0856 477 FunFam RING-type E3 ubiquitin transferase 56 142 - -
Lele08g0856 477 CDD RING-Ubox_PUB 66 108 IPR045210 -
Lele08g0856 477 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 48 143 IPR013083 -
Lele08g0856 477 SMART Ubox_2 65 132 IPR003613 GO:0004842|GO:0016567
Lele08g0856 477 SUPERFAMILY ARM repeat 173 462 IPR016024 -
Lele08g0856 477 Gene3D - 158 463 IPR011989 -
Lele08g0856 477 PANTHER WDSAM1 PROTEIN 59 468 IPR045185 GO:0061630
Lele08g0856 477 SUPERFAMILY RING/U-box 58 138 - -
Lele08g0856 477 ProSiteProfiles U-box domain profile. 61 139 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0856 Lele-ChrLele08 5395735 5397527 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g0856 56 476 U-box Gene Family AT3G52450 56.393 6.09e-171 486