Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0851 ATGAATGACTTATTCTCTAGCTCCTTCTCTCGCTTCCGTAGCGAGGACTCATCGCCGGACCATCACCAGCACCATGTCATCGAGATGGGTTCCGTCGCGACCTCCACCGGCGCTGGCAACCTCGACAAGTTCTTCGAGGACGTAGAATCTATAAAGGACGAGCTGAAAGAGCTTGAAAGACTGAACCAGAATCTGCAGAGCTCTCACGAGCAGAGCAAGACTCTTCACAATGCCAAGGCCGTCAAGGACCTTCGCTCTCGCATGGACAGCGACGTTGCTCTTGCTCTGAAGAAGGCGAAGCTCATCAAGGTCAAATTGGAGGCACTGGATCGATCCAACGCCGCCAGCCAGACCCTTCCCAATTGCGGACCCGGGTCGTCATCGGACCGGACTCGGACGTCCGTGGTGAATGGTTTGAGGAAGAACCTGAAGGATTTCATGGAAAGTTTCAATGAGCTCAGGCAGCGGATCTCCTCCGAGTACCGGGAGACCGTGCAACGCAGGTATTTCACGGTAACCGGCGAGAATCCCGACGAGAAGACCATCAACCTCCTGATTTCCACAGGTGAGAGTGAGACGTTCCTTCGGAAAGCCATACAAGAGCAAGGCAGGGGGAAAATACTGGATACCATCAATGAAATTCAAGAGAGGCACGATGCGGTGAAAGATTTGGAGAAGAATCTGCAGGAGTTGCATCAAGTGTTCCTGGACATGGCAGTTCTGGTGCAATCCCAAGCAGAGCAATTGGATGATATTGAGAGCCACGTGGCGAGAGCGAGCTCGTTTGTGAAGAGGGGAGCCCAGAAGCTACAGACGGCAAGGAAGCACCAGAAGAACACCAGGAAATGGACCTGTTATGCCATTACGCTTCTTCTTGTGATTATCTTGATCGTCGTGCTCTTCACTGTGAGGCCATGGGAAAACAATGGTGGCAGTTCGTCGTCATCACCACAACCACCTGCACCACCCCCACCGACTCCTCCTTCTTCAGCTTAA 996 0.5281 MNDLFSSSFSRFRSEDSSPDHHQHHVIEMGSVATSTGAGNLDKFFEDVESIKDELKELERLNQNLQSSHEQSKTLHNAKAVKDLRSRMDSDVALALKKAKLIKVKLEALDRSNAASQTLPNCGPGSSSDRTRTSVVNGLRKNLKDFMESFNELRQRISSEYRETVQRRYFTVTGENPDEKTINLLISTGESETFLRKAIQEQGRGKILDTINEIQERHDAVKDLEKNLQELHQVFLDMAVLVQSQAEQLDDIESHVARASSFVKRGAQKLQTARKHQKNTRKWTCYAITLLLVIILIVVLFTVRPWENNGGSSSSSPQPPAPPPPTPPSSA 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0851 331 CDD SNARE_syntaxin1-like 210 272 - -
Lele08g0851 331 SMART tSNARE_6 206 273 IPR000727 -
Lele08g0851 331 MobiDBLite consensus disorder prediction 316 331 - -
Lele08g0851 331 SMART SynN_4 36 162 IPR006011 GO:0016020
Lele08g0851 331 MobiDBLite consensus disorder prediction 1 23 - -
Lele08g0851 331 Coils Coil 211 234 - -
Lele08g0851 331 CDD SynN 41 198 IPR006011 GO:0016020
Lele08g0851 331 ProSitePatterns Syntaxin / epimorphin family signature. 217 256 IPR006012 GO:0005484|GO:0006886|GO:0016020
Lele08g0851 331 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 38 168 - -
Lele08g0851 331 SUPERFAMILY t-snare proteins 40 266 IPR010989 GO:0016020|GO:0016192
Lele08g0851 331 FunFam Syntaxin 132 204 304 - -
Lele08g0851 331 Gene3D - 206 304 - -
Lele08g0851 331 PANTHER SYNTAXIN 58 298 IPR045242 -
Lele08g0851 331 Gene3D - 39 171 - -
Lele08g0851 331 Pfam Syntaxin 43 246 IPR006011 GO:0016020
Lele08g0851 331 Coils Coil 136 156 - -
Lele08g0851 331 Coils Coil 41 78 - -
Lele08g0851 331 Pfam SNARE domain 247 299 IPR000727 -
Lele08g0851 331 MobiDBLite consensus disorder prediction 308 331 - -
Lele08g0851 331 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 211 273 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0851 Lele-ChrLele08 5355551 5356871 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g0851 29 330 SNARE and Associated Proteins AT3G11820 71.290 4.25e-154 433
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele05g1001 05 6187472 6188754 Lele08g0851 08 5355551 5356871 hybridization
Lele06g0860 06 5347474 5348793 Lele08g0851 08 5355551 5356871 hybridization