Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele08g0850 | ATGAACGACCTGTTCTCGGGCTCGTTCTCCCGCTTCCGCGGCGAGCAAGTCTCGCCGGACAACCAGCACCACGTCATCCAGATGACGGACACGTCGCCGTCGAGGGACGGAGTCAACCTCGACAAATTCTTCTCTGAAGTGGAGTCCGTCAAGGAGGAGCTCAAGGAGCTGGAGAGGCTCAACCAGAGCCTCCGTGGATCCCACGAACACAGCAAGACCCTTCACACCGCCGAATCCGTCAAGGAGCTTCGGTCGCGCATGGATGCTGACGTCGCCCTCGCTTTCAAGAAAGCTAAGCTCATTAAGGTCCGCTTGGAAGCACTGGACCGCTCCAACGAAGCCAACCGGATCCTGCCGGGCTGCGGACCCGGCTCTTCCTCCGACCGCACTAGGACCTCCGTGGTGAGCGGCTTGAGAAAAAAGCTGAAAGACTCCATGGACAGCTTCAACAACCTGCGCCAAAAGATATCCTCGGAGTACAGGGAAACCGTGCAACGTAGGTACTTCACCGTCACCGGAGAGAATCCCGACGAAAAAACCATCGACCTGCTCATCTCCACTGGTGAAAGCGAGACATTCTTGAAGAAGGCAATACAAGAGCAGGGGAGGGAGAGCATTGTGGAGACGATAAAGGAGATACAAGAGAGGAATGACGCAGTGAGGGAGATAGAGAGGAATCTGAATGAGCTGCACCAAGTTTTCATGGACATGGCGGTGTTGGTGCAGTCGCAGGGGGAACTATTGGACGACATAGAGAGCCACATGGCTCGAGCTAATTCGTTCGTAAGGAGTGGGGTCCAACAGCTCCATGTAGCCAAGAAGCACCAGAAAAACAGCCATAAATGGACCTGTTTTGGCATCTTGCTGCTTGTCATTATCGTCTTGATCATACTCCTCCCCATTCTTCTCAGAAACTGA | 918 | 0.5425 | MNDLFSGSFSRFRGEQVSPDNQHHVIQMTDTSPSRDGVNLDKFFSEVESVKEELKELERLNQSLRGSHEHSKTLHTAESVKELRSRMDADVALAFKKAKLIKVRLEALDRSNEANRILPGCGPGSSSDRTRTSVVSGLRKKLKDSMDSFNNLRQKISSEYRETVQRRYFTVTGENPDEKTIDLLISTGESETFLKKAIQEQGRESIVETIKEIQERNDAVREIERNLNELHQVFMDMAVLVQSQGELLDDIESHMARANSFVRSGVQQLHVAKKHQKNSHKWTCFGILLLVIIVLIILLPILLRN | 305 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele08g0850 | 305 | Pfam | Syntaxin | 42 | 245 | IPR006011 | GO:0016020 | |
| Lele08g0850 | 305 | Coils | Coil | 206 | 233 | - | - | |
| Lele08g0850 | 305 | ProSitePatterns | Syntaxin / epimorphin family signature. | 216 | 255 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 | |
| Lele08g0850 | 305 | Gene3D | - | 200 | 303 | - | - | |
| Lele08g0850 | 305 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 210 | 272 | IPR000727 | - | |
| Lele08g0850 | 305 | CDD | SynN | 40 | 197 | IPR006011 | GO:0016020 | |
| Lele08g0850 | 305 | FunFam | Syntaxin 132 | 203 | 303 | - | - | |
| Lele08g0850 | 305 | PANTHER | SYNTAXIN | 43 | 295 | IPR045242 | - | |
| Lele08g0850 | 305 | SMART | tSNARE_6 | 205 | 272 | IPR000727 | - | |
| Lele08g0850 | 305 | SMART | SynN_4 | 35 | 161 | IPR006011 | GO:0016020 | |
| Lele08g0850 | 305 | SUPERFAMILY | t-snare proteins | 38 | 265 | IPR010989 | GO:0016020|GO:0016192 | |
| Lele08g0850 | 305 | Gene3D | - | 38 | 170 | - | - | |
| Lele08g0850 | 305 | FunFam | Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group | 37 | 167 | - | - | |
| Lele08g0850 | 305 | Coils | Coil | 40 | 67 | - | - | |
| Lele08g0850 | 305 | Pfam | SNARE domain | 246 | 298 | IPR000727 | - | |
| Lele08g0850 | 305 | CDD | SNARE_syntaxin1-like | 209 | 269 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele08g0850 | Lele-ChrLele08 | 5352259 | 5353268 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele08g0850 | 28 | 284 | SNARE and Associated Proteins | AT3G11820 | 72.374 | 9.98e-138 | 390 |