Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0848 ATGTCATCTGTAACTTCGACTCCTTGGTGGAGCGCGTTAGGGCCCCAAACAATTTTTGGCGAGTCTTGTGGCCAAATGAAACATTTTTCACTGGAGATTCCCAACTATGTAGACCAACTTGCTGCCAATAAGCAAGCAGGAAGAGGAGCTGAACAAGTGTGTACTCAGTTCGCTATCCTTTCAGTCCCAACTGCCCTCTTAGCTGAGCTGGCTTACTATAAAATAAATCTGGGTTCTTACCGCCAGTTTGATAACGAAAGGCCTTCTCTTAATACTGCTTATGATTGTAAAATGTCAGGTGATCAGAAGTCTCAAACTGGCATATCACTTCAGTCATCGATTCCTGATCCTCACACTCGTGTTGAGCTGGGAATTAATCAGCCCGCGCCTTATATGCATGAATCGCGCCATCTCCATGCGGTGCGTCGCCCAAGAGGATGCGGTGGTCGGTTCCTGAACACAAAAGCCATGAAGAGCAGCAATGCAAAAAGTGGAAGTGAAGGGAATAAAACTGGTGATGATCAAATGCTGTCCACTGGTTCTCAAAGCTCCGAAGTGCTGCAATCATCAAAGGAAACAGGTGGCAGCAGTCCACACATGTGTGGGACAGAGGTGACTAGCATGTATGCAAGGGGAGGTCTTGATCATGGCTTTACATTCAACCATCTCGGACCCGCCATTCATCACACTCTTGCAGGCACGATGGATGGTCACGGTGGCATGGTTATGCCCGGCAAATGGGTTGCAGCACCAGTGAGTGGTGAGTGGTGGAAATGTGTGGGAATGGAAAAGTCTGAGGGGAATGTTTCGACCTCGTCTCTCTCCATGGCTGCCACGGCCTCTCCTTCCTCTTCTCTCTGCAATCGACTCCACAGCCTCTACGTCAGTCCCTCTTCCTTCTCAGTCACCCTCAAATTCCCTCTCAGACCCATTTCTCAGAAACCTCCCAACCTCAATCTCAAATCCCACTTCCTCAATTCTTCTCCTCTCTCACTCTACCATCTTCGATTGGCTTCGGCCGCCTTCGATGGATTCGAAGTTGTTCAAGACAGCACCAGCGCTGAGCAGGTAGAACAGGTAGAGCCAGAAGCCAAACCCTCTGAAAAATCAGAACAAGAGGAAGATGACCAAAAGTTATCTGAGTCAAACGAAGCTGGGAGGCTCTATGTGGGAAATTTGCCCTTTTCAATGACTTCTTCTCAGTTATCCGAGATTTTTGAAGAGGCGGGCAATGTGGTGTCTGTAGAGATAGTATATGATCGCGTCACGGATAGAAGCAGAGGATTTGCATTTGTCACAATGGGAAGCGCTGAGGATGCTAAAGAAGCCATTCGGATGTTTGATGGCTCCCAAGTTGGAGGTAGAACGGTGAAGGTAAACTTGCCTGAAGTGCCAAGAGGAGGTGAAAGGCTAGTGATGGGGCCAAAAGTAAGGAACAATTACAGAGGCTTCGTGGACAGTCCTCACAAGATATATGCTGGAAACCTTGGATGGGCATTAACTTCACAGGGTCTGAGAGATGCTTTTGCTGGTCAGCCTGGCTTTTTGAGTGCCAAGGTCATCTATGAAAGGGACACTGGAAGATCTCGAGGCTTTGGTTTTGTCTCCTTCGAAACTGCTGAGAATGTTGAGGCTGCTTTGAATGCTATGAATGGTGTGGAGGTTCAAGGCAGGCCTCTGAGATTGAATTTGGCTGCAGATAGGACAAGTGCGTCTCCTCCATCAATGGATGAAACTACAGAAGCTAATGTTGATACCTCGGAATTGGTGTCTAGCGTGAGCACATGA 1788 0.481 MSSVTSTPWWSALGPQTIFGESCGQMKHFSLEIPNYVDQLAANKQAGRGAEQVCTQFAILSVPTALLAELAYYKINLGSYRQFDNERPSLNTAYDCKMSGDQKSQTGISLQSSIPDPHTRVELGINQPAPYMHESRHLHAVRRPRGCGGRFLNTKAMKSSNAKSGSEGNKTGDDQMLSTGSQSSEVLQSSKETGGSSPHMCGTEVTSMYARGGLDHGFTFNHLGPAIHHTLAGTMDGHGGMVMPGKWVAAPVSGEWWKCVGMEKSEGNVSTSSLSMAATASPSSSLCNRLHSLYVSPSSFSVTLKFPLRPISQKPPNLNLKSHFLNSSPLSLYHLRLASAAFDGFEVVQDSTSAEQVEQVEPEAKPSEKSEQEEDDQKLSESNEAGRLYVGNLPFSMTSSQLSEIFEEAGNVVSVEIVYDRVTDRSRGFAFVTMGSAEDAKEAIRMFDGSQVGGRTVKVNLPEVPRGGERLVMGPKVRNNYRGFVDSPHKIYAGNLGWALTSQGLRDAFAGQPGFLSAKVIYERDTGRSRGFGFVSFETAENVEAALNAMNGVEVQGRPLRLNLAADRTSASPPSMDETTEANVDTSELVSSVST 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0848 595 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 489 567 IPR000504 GO:0003723
Lele08g0848 595 Gene3D - 118 155 - -
Lele08g0848 595 MobiDBLite consensus disorder prediction 568 595 - -
Lele08g0848 595 SMART cbf3 93 154 IPR001289 GO:0003700|GO:0006355
Lele08g0848 595 MobiDBLite consensus disorder prediction 353 383 - -
Lele08g0848 595 SMART rrm1_1 490 563 IPR000504 GO:0003723
Lele08g0848 595 SMART rrm1_1 387 460 IPR000504 GO:0003723
Lele08g0848 595 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 386 464 IPR000504 GO:0003723
Lele08g0848 595 ProSiteProfiles NF-YA/HAP2 family profile. 130 154 IPR001289 GO:0003700|GO:0006355
Lele08g0848 595 CDD RRM_HP0827_like 387 463 - -
Lele08g0848 595 Gene3D - 344 467 IPR012677 -
Lele08g0848 595 FunFam 33 kDa ribonucleoprotein, chloroplastic 471 575 - -
Lele08g0848 595 SMART rrm2_1 387 460 IPR003954 GO:0003676
Lele08g0848 595 MobiDBLite consensus disorder prediction 154 202 - -
Lele08g0848 595 MobiDBLite consensus disorder prediction 151 202 - -
Lele08g0848 595 Gene3D - 474 575 IPR012677 -
Lele08g0848 595 MobiDBLite consensus disorder prediction 567 595 - -
Lele08g0848 595 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 491 561 IPR000504 GO:0003723
Lele08g0848 595 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 388 458 IPR000504 GO:0003723
Lele08g0848 595 PANTHER OS02G0815200 PROTEIN 312 568 - -
Lele08g0848 595 SUPERFAMILY RNA-binding domain, RBD 387 568 IPR035979 GO:0003676
Lele08g0848 595 MobiDBLite consensus disorder prediction 361 382 - -
Lele08g0848 595 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 129 151 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0848 Lele-ChrLele08 5340814 5346927 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g0848 382 594 Eukaryotic Initiation Factors Gene Family AT3G16380 28.837 3.87e-14 73.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Lele08g0848 RRM_1 1.7e-20 CL0221
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele08g0848 08 5340814 5346927 Lele13g1601 13 25001079 25006786 CCT
Lele08g0848 08 5340814 5346927 Lele14g1534 14 23400950 23404091 CCT
Lele08g0848 08 5340814 5346927 Lele15g0815 15 4713068 4718904 CCT
Lele08g0848 08 5340814 5346927 Lele16g0835 16 4669477 4672659 CCT
Lele05g0998 05 6173898 6179666 Lele08g0848 08 5340814 5346927 hybridization
Lele06g0858 06 5338083 5339472 Lele08g0848 08 5340814 5346927 hybridization