Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0835 ATGGGGGATTTAAAAAGGCGAAGAAAAGCCAAACAGCATTCTCTGGGTTGCCGATTCAAGGCTCGATCTCCTCTTGATGTGTGCTCCCTTCATTTCTTGATCTCTTTTCTGGAGCTTGCCAATTACCAGTGGAGGGCAACAAAAATTATATTTTCTGGCTCTGAAGTTTGGGCTGATGTATTGAAGGTTCCGGACATGGAAGACAAGAACAATGAAAGTCATATGACATCAGCTGCAGCCTTTGTGGAAGGGGGCATTCAAGAAGCATGTGATGACTCTTGCAGCATATGCCTTGAGGATTTTAGTAAAAGCAATCCTCCAACGGTTACTACTTGCAAGCATGATTTTCACCTGCAGTGCATTCTTGAATGGTGTCAGAGGAGCTCCCAGTGCCCTATGTGTTGGCAGTCTATTAATTTCAAGGATTCTACCAGTCAAGAATTGTTTGAGGCAGTGGTTCAGGAAAGGAATTTGAGAGCTACTTCCTCAAGAAATGCAACGATTTTCCATCATCTGGGTCTTGGTGATTTTGACTATGTCAGTTATTTACAATTATCCATGGGAGTAAGCGAAGCAGATATTGAAGAGAGGATAATTCAACATTTAGCTGCTGCTACAGTCATGGGAAGAGCCCGTCACCTTGGTCGGATAGAAGGAAGCAGGACTAGGTCATTTTCTCATGGTCGTCCTCCTTTCATAGTGTTCTCGACTCCTCCACCTGGTGCTGTTTCAGCTGCTGGAGGGGGGACCGAACCTACTGCAATTCCTGTAGGAAATCCTTCTACCCCACTTACATCTGAAGGAGATGAACCATCACAGCAGATCCCAAGCCTTCAAACACACAGTTCTTTACCTGCCGGATCTACTGTCACGACGATGAATCGTGAAGGAATTTTTTTTAATGATCGTTCTGCTGTCCATTCTGTACCACCTGATGAGGGCAGAGCAGGGCCATCAGAACTTCAGTCATTTTCCGAGTCAATGCGATCCAGCTTAACTGATATTAACTTGTTATCAAAAGGTACAAAGAGAGTATTTCAAGGGGCGCAAGGGGATGGAAGGAAAGGCTATTCTGTCGTAGTACTTCCATGTCTGATATTGGCTCAGAAGTTAGGAGAGAGTTGA 1125 0.4462 MGDLKRRRKAKQHSLGCRFKARSPLDVCSLHFLISFLELANYQWRATKIIFSGSEVWADVLKVPDMEDKNNESHMTSAAAFVEGGIQEACDDSCSICLEDFSKSNPPTVTTCKHDFHLQCILEWCQRSSQCPMCWQSINFKDSTSQELFEAVVQERNLRATSSRNATIFHHLGLGDFDYVSYLQLSMGVSEADIEERIIQHLAAATVMGRARHLGRIEGSRTRSFSHGRPPFIVFSTPPPGAVSAAGGGTEPTAIPVGNPSTPLTSEGDEPSQQIPSLQTHSSLPAGSTVTTMNREGIFFNDRSAVHSVPPDEGRAGPSELQSFSESMRSSLTDINLLSKGTKRVFQGAQGDGRKGYSVVVLPCLILAQKLGES 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0835 374 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 84 151 IPR013083 -
Lele08g0835 374 MobiDBLite consensus disorder prediction 241 287 - -
Lele08g0835 374 SMART ring_2 94 134 IPR001841 -
Lele08g0835 374 Pfam Ring finger domain 92 134 IPR001841 -
Lele08g0835 374 ProSiteProfiles Zinc finger RING-type profile. 94 134 IPR001841 -
Lele08g0835 374 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 72 142 - -
Lele08g0835 374 SUPERFAMILY RING/U-box 86 142 - -
Lele08g0835 374 MobiDBLite consensus disorder prediction 255 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0835 Lele-ChrLele08 5258810 5262169 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g0835 91 142 C3H Transcription Factor Family AT4G00335 48.077 1.51e-13 67.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele08g0835 08 5258810 5262169 Lele08g0835 08 5258810 5262169 ECH
Lele05g0987 05 6099250 6102075 Lele08g0835 08 5258810 5262169 hybridization
Lele06g0845 06 5247227 5250450 Lele08g0835 08 5258810 5262169 hybridization