Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0829 ATGACCGGTAGTAGCAGTAGTTTGATCCTCCAAACGCTGAGGCTTAAGAATTCCAAGCTTGTGCTTCTCGAATATTGCTCCAATATTCGTGATATCAACATCATCCATGCTCATATGATAAGAACCCTTTCCTTCTTCGACGTATTTGTAGCCAGTCGTCTGATTGCCTTCTGTATAGACGCAACCATTGGAACAAGCTTGCTGGATTATGCTGTTAGGGTCTTCTCCCAAATCCGGAATCCTAATCTCTTTATCTACAACGCGTTGATCCGTGGCTGCTCAAGCAGTGAGAATCCAGAAAATTCATTTCATTACTACATTCAAGCCCAGCGCGTAGGCATTCTCCCTGATAATTTAACTTTTCCATTTTTGGTTAAGTCATCTGCCCAGTTGGAGTCTGCCGCTATGGCCACTCAAGCACATTGTCTAATCGTTAAACACGGGTTTGAAAACGATGTCTATGTGCAAAATTCTCTTGTTCATGTCTATTCTACAGTTGGGGACATTAAGGCAGCGAGCTGCATTTTCCATAGAATTCATCGATTTGATGTAATCTCCTGGACTTCCATGATCGCATGTTTTAGTAAACGCGGGGATGTCGAATCTGCACGCGAACTGTTTGATAGAATGCCGCAGAAAAGTTTGGTGACGTGGAGCACAATGATCGGTGGTTATGCTCGGAACAATCGTTTCGATGAAGCAGTTGCACTATTTCAAGTTCTTCAGGAAGAAGGAGTGATGGCTAATGAAGTAGTGATGGTGAGTGTGATATCTTCATGTGCCCATTTAGGTGCTCTTGAAAGAGGGGCGAAAGCCCATGAGTATGTGATAAGAAACAACTTGACTATGAATGTGATCCTTGGAACAGCTATTGTTGACATGTATGGAAAGTGTGGGAATATTGAGAAAGCTATTCAGGTTTTTGAGCAACTCCCAGAAAAGGACACACTTTGTTGGACAGCTTTGATTGCTGGATTAGCCATGCAAGGTTATGGCCAGAAAGCCCTTCAATATTTTTCTGATATGGTGAAAGCAGGGTTTAAGCCAAGAGATATTACATTTACAGCAGTATTAGCAGCTTGCAGCCATGGGGGATTGGTAGAAAGAGGTTTGGAAATATTTGAAAGTATGAAGAGGGTTTACTGTATAGAACCAAGGTTGGAACACTATGGATGCATGGTTGACCTTCTCGGCCGGGCAGGGAACTTGATGGAGGCAGAGAAATTTGTTCTCGAAATGCCAGTGAAGCCGAATGCTGCGGTGTGGGGGGCTTTGCTGGGAGCTTGTAAGATTCACAAAAATGTAGAACTTGGAGAAAGGGTGGGAAAGATTTTGATCCAGCTGCAACCAGAACACAGTGGATATTATGTGCTGCTTTCAAACATATATGCACGCACTAACAAGTGGGAAAATGCCAGTATCGTGAGACGAATGATGAAGGACAGAGGAGTTAGAAAGCCACCTGGATTTAGTCTCATTGAGATGGATGGAAAGATTCATGAATTCACGGTTGGAGATACATCACACCCAGAAATTGAGCAGATAGAAAGAACGTGGGAAGATATACTCCAGAAAATTAGATTAGCAGGGTACGTTGGTAGTACAGGTGATGCATTGTTTGACATAGATGAAGAAGAAAAGGAAGATGCACTTCACAGGCATAGTGAAAAATTGGCTATTGCGTTTGGAATTCTGAAGACACAAGCTCGTATTCCAATTCGCATAGTGAAAAACTTGCGAGTCTGTGAAGATTGCCACATGGCTACGAAGTTCATCTCGAAGGTTTTCAAAGTAGACTTGATTGTCAGAGATCGAAACCGGTTCCACCATTTTAAAGAAGGCTCGTGTTCTTGTCCTGATTTCTCCAAAGATTCCGCTGCTCCTAACGGTTCTGATCCTTCGGGCTCAGGTCAGAGTAGATCACCTGGAACGGTGAAGATTGCCGATGTCGAATCGGAACCACGGGAGCCTGAAAATCCTCCCGCTGATGGCGCGAAATCTGACAAATCCACTCACGTTAAAAGGGCGTGCAGTGTTGGACGTCAAATTGAATCAGTGTTGGAAAGAAAAACTCAAAACTTGAAGGATGACGGCGTTGCTGTCAATCTTGTTATGGAATTTTGTTCTGGTGGGGAGCTTTTTGACAGTATCATACAGAGAGGACACTACACTGAGAGAAAGGCGGCTCAGCTCGCAAGGGTAATGGCCCATGTTGTGGAGGCCTTCCACTCTTTGGGTGTCATGCATCGGGACTTGAAGCCGGAGAATTTTCTGTTCGCTAGCCAGGACGAAGATTCACTTCTCAAGACAATAGATTTTGGGCTTTCCGTATTCTTCCAACCGGGTCAAACATTCACTGATGTAGTTGGCAGCCCATACTATGTGGCCCCTGAAGTTCTGCTGAAGCACTATGGTCAAGAATGTGATGTTTGGAGTGTTGGGGTAATCATTTATATATTACTATGTGGAGTTCCGCCATTTTGGGATGAGACCGAAGAAGGAATTTTTGAGCAAGTTTTGCGAGGAGAACTTGACTTTATCTCTGAACCATGGCCTAGCATATGTGAGAGTACAAAGGATCTTGTCCGTAGAATGCTAATAGGGGACCCTAAAAAGAGGATGACAGCACATGAAGTTCTCTGTACGTATGCATGCCACCCTTGGGTTCAGGTAGATGGTGTTGCTCCTGACAAACCTCTTGATTCTGCTGTCTTGTCTCGTTTGGAGAAATTTTCTGCTTTGAACAAGCTTAAGAAGATGGCTATTCGATTTGTTCTGAACGACTACTTCATGTTGTCACTTCCGTCATCTGGTTTGATTCACTTTATTGTCCTTTGGAAGGCGGACATTGATGATAGTGGCACCATCGACTATGGTGAATTCATAGCAGCCATGCTTCATATGAACAAGGTTCATAGGGAGGAGCATCTATTTGCAGCTTTCAACTACTTTGACAAAGATGGCAGTGGGTTCATTACACGAGATGAACTTGAACACGCCTGCGAACAGTTTGGTCTGCAAGATGTTCAGCTAGATGACATGATAAAAGAAATTGACCGGGATAATATTGCATATAGTGTTGAAATGAAATGCCAGAATTTTGTGGTCACAGAAATAACCGACCGTGACCTTGTGAGGATAAGACCCAGCGAAGAACAGAGGAAAAGAATTCATGGGTGGCTGTGGGGAGACTCAGAGATCGTGTCTGCCATGGATCGCCACCATCATCGCGAAGAAACGCCGCCCCCCAATAACTCGAAGTCGATCAATGGCGGCTGCCATGTATGCTATCTAGATACTGTTCTTCAACCAATGGCGGCTCAATATGGCAACATTTTACAACTTTAA 3348 0.4397 MTGSSSSLILQTLRLKNSKLVLLEYCSNIRDINIIHAHMIRTLSFFDVFVASRLIAFCIDATIGTSLLDYAVRVFSQIRNPNLFIYNALIRGCSSSENPENSFHYYIQAQRVGILPDNLTFPFLVKSSAQLESAAMATQAHCLIVKHGFENDVYVQNSLVHVYSTVGDIKAASCIFHRIHRFDVISWTSMIACFSKRGDVESARELFDRMPQKSLVTWSTMIGGYARNNRFDEAVALFQVLQEEGVMANEVVMVSVISSCAHLGALERGAKAHEYVIRNNLTMNVILGTAIVDMYGKCGNIEKAIQVFEQLPEKDTLCWTALIAGLAMQGYGQKALQYFSDMVKAGFKPRDITFTAVLAACSHGGLVERGLEIFESMKRVYCIEPRLEHYGCMVDLLGRAGNLMEAEKFVLEMPVKPNAAVWGALLGACKIHKNVELGERVGKILIQLQPEHSGYYVLLSNIYARTNKWENASIVRRMMKDRGVRKPPGFSLIEMDGKIHEFTVGDTSHPEIEQIERTWEDILQKIRLAGYVGSTGDALFDIDEEEKEDALHRHSEKLAIAFGILKTQARIPIRIVKNLRVCEDCHMATKFISKVFKVDLIVRDRNRFHHFKEGSCSCPDFSKDSAAPNGSDPSGSGQSRSPGTVKIADVESEPREPENPPADGAKSDKSTHVKRACSVGRQIESVLERKTQNLKDDGVAVNLVMEFCSGGELFDSIIQRGHYTERKAAQLARVMAHVVEAFHSLGVMHRDLKPENFLFASQDEDSLLKTIDFGLSVFFQPGQTFTDVVGSPYYVAPEVLLKHYGQECDVWSVGVIIYILLCGVPPFWDETEEGIFEQVLRGELDFISEPWPSICESTKDLVRRMLIGDPKKRMTAHEVLCTYACHPWVQVDGVAPDKPLDSAVLSRLEKFSALNKLKKMAIRFVLNDYFMLSLPSSGLIHFIVLWKADIDDSGTIDYGEFIAAMLHMNKVHREEHLFAAFNYFDKDGSGFITRDELEHACEQFGLQDVQLDDMIKEIDRDNIAYSVEMKCQNFVVTEITDRDLVRIRPSEEQRKRIHGWLWGDSEIVSAMDRHHHREETPPPNNSKSINGGCHVCYLDTVLQPMAAQYGNILQL 1115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0829 1115 Pfam Protein kinase domain 699 881 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele08g0829 1115 ProSitePatterns Serine/Threonine protein kinases active-site signature. 747 759 IPR008271 GO:0004672|GO:0006468
Lele08g0829 1115 Gene3D - 967 1022 - -
Lele08g0829 1115 MobiDBLite consensus disorder prediction 623 674 - -
Lele08g0829 1115 FunFam Pentatricopeptide repeat-containing protein 289 558 - -
Lele08g0829 1115 ProSiteProfiles EF-hand calcium-binding domain profile. 972 1007 IPR002048 GO:0005509
Lele08g0829 1115 Gene3D Tetratricopeptide repeat domain 17 181 IPR011990 GO:0005515
Lele08g0829 1115 Gene3D Tetratricopeptide repeat domain 288 519 IPR011990 GO:0005515
Lele08g0829 1115 SUPERFAMILY TPR-like 196 472 IPR011990 GO:0005515
Lele08g0829 1115 ProSitePatterns EF-hand calcium-binding domain. 985 997 IPR018247 -
Lele08g0829 1115 Gene3D Tetratricopeptide repeat domain 182 284 IPR011990 GO:0005515
Lele08g0829 1115 FunFam Calcium-dependent protein kinase 5 713 897 - -
Lele08g0829 1115 CDD EFh 949 997 IPR002048 GO:0005509
Lele08g0829 1115 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 19 559 - -
Lele08g0829 1115 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 183 213 IPR002885 -
Lele08g0829 1115 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 214 248 IPR002885 -
Lele08g0829 1115 ProSiteProfiles Protein kinase domain profile. 605 889 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele08g0829 1115 Pfam EF-hand domain 977 1003 IPR002048 GO:0005509
Lele08g0829 1115 SUPERFAMILY Protein kinase-like (PK-like) 701 890 IPR011009 -
Lele08g0829 1115 Pfam PPR repeat family 314 361 IPR002885 -
Lele08g0829 1115 ProSitePatterns EF-hand calcium-binding domain. 949 961 IPR018247 -
Lele08g0829 1115 FunFam Calmodulin A 933 1035 - -
Lele08g0829 1115 SMART serkin_6 573 889 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele08g0829 1115 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 315 349 IPR002885 -
Lele08g0829 1115 MobiDBLite consensus disorder prediction 623 645 - -
Lele08g0829 1115 Pfam DYW family of nucleic acid deaminases 530 621 IPR032867 GO:0008270
Lele08g0829 1115 MobiDBLite consensus disorder prediction 649 674 - -
Lele08g0829 1115 Pfam E motif 432 494 IPR046848 -
Lele08g0829 1115 Gene3D - 949 966 - -
Lele08g0829 1115 CDD STKc_CAMK 668 888 - -
Lele08g0829 1115 Gene3D Transferase(Phosphotransferase) domain 1 684 931 - -
Lele08g0829 1115 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 82 116 IPR002885 -
Lele08g0829 1115 SMART efh_1 976 1004 IPR002048 GO:0005509
Lele08g0829 1115 SMART efh_1 941 968 IPR002048 GO:0005509
Lele08g0829 1115 Pfam PPR repeat 85 112 IPR002885 -
Lele08g0829 1115 Pfam PPR repeat 185 213 IPR002885 -
Lele08g0829 1115 Pfam PPR repeat 216 246 IPR002885 -
Lele08g0829 1115 Pfam PPR repeat 389 414 IPR002885 -
Lele08g0829 1115 TIGRFAM PPR: pentatricopeptide repeat domain 318 349 IPR002885 -
Lele08g0829 1115 TIGRFAM PPR: pentatricopeptide repeat domain 216 247 IPR002885 -
Lele08g0829 1115 TIGRFAM PPR: pentatricopeptide repeat domain 185 214 IPR002885 -
Lele08g0829 1115 TIGRFAM PPR: pentatricopeptide repeat domain 352 379 IPR002885 -
Lele08g0829 1115 ProSiteProfiles EF-hand calcium-binding domain profile. 947 971 IPR002048 GO:0005509
Lele08g0829 1115 CDD EFh 976 1022 IPR002048 GO:0005509
Lele08g0829 1115 SUPERFAMILY EF-hand 944 1022 IPR011992 -
Lele08g0829 1115 FunFam Pentatricopeptide repeat-containing protein chloroplastic 139 284 - -
Lele08g0829 1115 Pfam E+ motif 499 526 IPR046849 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0829 Lele-ChrLele08 5225201 5233141 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele08g0829 696 1026 EF-hand Containing Proteins AT2G38910 67.213 1.50e-166 502
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Lele08g0829 Pkinase 2.2e-46 CL0016