Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele08g0828 ATGTCACCATCGCGGACGATGCAAAGTACAAACTACGCAGTTTGCCTGAGATCTTCTGGTTTGAGAGGGACGACATCGAAGGATTTTGGGATAGTTTCGAATGTGATTTGTTTTATGGATTCAGAAGTAGTTCCATCTTCCACGAATTCAGTAAAATGTTGTGACTGCGGCTGTAGTTGCTCGTTGGCAGCTGATTCTTCAGCAACCTTGCTTCGTACTGTTAAACGGAAGCTTGACGAGTTTGAACAGGACGACAAATTCTCTATACCTGAGTTGGATTACACTTCAGTTGCACGGGTCCAAATTGAAAATGAATGTGAAGCGTTACGTGAGACAGTGACTAGGCAACAGCAAGCAATACAAGATCTATGTGCTGAATTGGAGGAGGAGAGAAATGCTTCAACAACGGCAGCAAATGAGGCCATGTCTATGATATTGAGATTGCAGAGGGAGAAAGCAGAGATCCAAATGGAAGCTCGGCAGTTCAAGAATTTTGTAGAGGAGAAGACTTCACATGACCAGGGGGAGCTTTTAGAATTGGAGGACTTGTTGTATAAGAGAGAGCAGACAATACAAGCGCTTACATGTGAAGTTCAGGCTTATAAGCACAGGATGATGAGTTATGGCCTCACGGAATCAGAGGCAGCAGGTGAAAGGAACCTGAGCTTGGAGGAATTGGGTGATCAATATGAACTCCCCACCTATGACTACCCTCTTTTAAAATGCATTGGACACGCTGCCACAGATGCCGAGAATGATGACACAGATATTGAGAAATATACGTTCGGTGAAACTCCTTCCGACCGATTGAGAAACTTGGAAAATAGAATCTCCCAAATGGAGAGAAGTTCTATTCATAACCAAGTGGATGGGGATTATACGGGGAACACTATTCTGGCGAAGGAGGTAGATGGACAATCTCCAAGGCGGACTAAACATTTGAGAAAGATATCCAATGAATCAAGTTCATTCATAGTGGGTTCTCCCAATAGCTTTAGGAAGATGGATTGTGTCTCACAACCAGATGACCCTTCCAATTTGAGAAGGGTGGATTATGCATCAGAAGCTGGTGATGATATGGGTGATAGAGTTTATACGGTTGACTCTGGTCATACGGGCACACCACACAAAGGTTTTTCAGAGTCCAAATATGGAGCTGTTTATGAAGATTATTCGACTGCTCCAATGGAGTCACTGAATCATGCTGCTTTTGAAGATCCCGACATAAAGAAGCTTTACACGAGACTTCAAGCTCTTGAGGCTGATAGGGAATCAATGAGGCAGGCGATCATTTCAATGCGCACTGATAAAGCACAGGTTTTGCTACTTAAGGAAATAGCTCAACATTTGTGCAAAGGGATGTCCCCGCAAAGAAGAATGACAGTGAGGAAGCCAATTGTTGTTCGTAGTTTTTCATTTTTGTCACTTTTTAAGTGGATGATATCGTTGGTTTTTTGGAGAAAGAAAGCGGGTCAAAGCAAGTATATGTTGGGGCTACCAGCCAATGGCGTGGGCTTACTAATGCTTCTGGACAAGAGGCCCCGTGGGAGGCCATGGAGATGCGTCTCAGTCACCCAGTTGGGAGATTAG 1590 0.4403 MSPSRTMQSTNYAVCLRSSGLRGTTSKDFGIVSNVICFMDSEVVPSSTNSVKCCDCGCSCSLAADSSATLLRTVKRKLDEFEQDDKFSIPELDYTSVARVQIENECEALRETVTRQQQAIQDLCAELEEERNASTTAANEAMSMILRLQREKAEIQMEARQFKNFVEEKTSHDQGELLELEDLLYKREQTIQALTCEVQAYKHRMMSYGLTESEAAGERNLSLEELGDQYELPTYDYPLLKCIGHAATDAENDDTDIEKYTFGETPSDRLRNLENRISQMERSSIHNQVDGDYTGNTILAKEVDGQSPRRTKHLRKISNESSSFIVGSPNSFRKMDCVSQPDDPSNLRRVDYASEAGDDMGDRVYTVDSGHTGTPHKGFSESKYGAVYEDYSTAPMESLNHAAFEDPDIKKLYTRLQALEADRESMRQAIISMRTDKAQVLLLKEIAQHLCKGMSPQRRMTVRKPIVVRSFSFLSLFKWMISLVFWRKKAGQSKYMLGLPANGVGLLMLLDKRPRGRPWRCVSVTQLGD 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele08g0828 529 ProSiteProfiles GTD-binding domain profile. 104 202 IPR007656 -
Lele08g0828 529 Coils Coil 99 133 - -
Lele08g0828 529 Coils Coil 138 158 - -
Lele08g0828 529 Pfam Zein-binding 108 198 IPR007656 -
Lele08g0828 529 Coils Coil 409 436 - -
Lele08g0828 529 PANTHER BNAANNG28530D PROTEIN 99 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele08g0828 Lele-ChrLele08 5219802 5223015 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele08g0828 08 5219802 5223015 Lele13g1584 13 24894332 24896222 CCT
Lele08g0828 08 5219802 5223015 Lele14g1515 14 23291836 23293885 CCT
Lele08g0828 08 5219802 5223015 Lele15g0834 15 4836672 4838551 CCT
Lele08g0828 08 5219802 5223015 Lele16g0852 16 4778886 4780883 CCT
Lele08g0828 08 5219802 5223015 Lele08g0828 08 5219802 5223015 ECH
Lele05g0980 05 6059887 6062170 Lele08g0828 08 5219802 5223015 hybridization
Lele06g0839 06 5207579 5210763 Lele08g0828 08 5219802 5223015 hybridization